Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19745

Experiment: soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotidesABZR87_RS19740 and ABZR87_RS19745 are separated by 61 nucleotidesABZR87_RS19745 and ABZR87_RS19750 overlap by 4 nucleotidesABZR87_RS19750 and ABZR87_RS19755 overlap by 14 nucleotides ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161 _RS19735 ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591 _RS19740 ABZR87_RS19745: ABZR87_RS19745 - DoxX family protein, at 805,653 to 806,123 _RS19745 ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878 _RS19750 ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734 _RS19755 Position (kb) 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 804.687 kb on + strandat 804.688 kb on - strandat 804.688 kb on - strandat 804.765 kb on + strandat 804.765 kb on + strandat 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.816 kb on + strand, within ABZR87_RS19735at 804.817 kb on - strand, within ABZR87_RS19735at 804.963 kb on + strand, within ABZR87_RS19735at 804.994 kb on + strand, within ABZR87_RS19735at 804.995 kb on - strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.230 kb on + strand, within ABZR87_RS19740at 805.230 kb on + strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.346 kb on - strand, within ABZR87_RS19740at 805.449 kb on + strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.520 kb on - strand, within ABZR87_RS19740at 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.629 kb on - strandat 805.629 kb on - strandat 805.629 kb on - strandat 805.780 kb on + strand, within ABZR87_RS19745at 805.780 kb on + strand, within ABZR87_RS19745at 805.780 kb on + strand, within ABZR87_RS19745at 805.927 kb on + strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.999 kb on + strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.008 kb on + strand, within ABZR87_RS19745at 806.091 kb on - strandat 806.138 kb on - strandat 806.185 kb on - strandat 806.290 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.542 kb on - strand, within ABZR87_RS19750at 806.590 kb on - strand, within ABZR87_RS19750at 806.745 kb on + strand, within ABZR87_RS19750at 806.746 kb on - strand, within ABZR87_RS19750at 806.794 kb on - strand, within ABZR87_RS19750at 807.028 kb on + strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.062 kb on + strand, within ABZR87_RS19755

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB
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804,687 + +0.4
804,688 - +0.5
804,688 - +0.0
804,765 + -1.0
804,765 + +2.5
804,788 - ABZR87_RS19735 0.12 +0.1
804,788 - ABZR87_RS19735 0.12 +0.1
804,788 - ABZR87_RS19735 0.12 -0.6
804,788 - ABZR87_RS19735 0.12 -0.4
804,816 + ABZR87_RS19735 0.18 +0.4
804,817 - ABZR87_RS19735 0.18 -0.7
804,963 + ABZR87_RS19735 0.53 +0.3
804,994 + ABZR87_RS19735 0.60 +0.2
804,995 - ABZR87_RS19735 0.61 -0.9
805,036 + ABZR87_RS19735 0.70 -0.6
805,036 + ABZR87_RS19735 0.70 +0.5
805,230 + ABZR87_RS19740 0.13 +0.6
805,230 + ABZR87_RS19740 0.13 +0.1
805,231 - ABZR87_RS19740 0.13 +0.6
805,231 - ABZR87_RS19740 0.13 -1.0
805,231 - ABZR87_RS19740 0.13 -0.0
805,231 - ABZR87_RS19740 0.13 -1.6
805,231 - ABZR87_RS19740 0.13 +0.6
805,346 - ABZR87_RS19740 0.41 -0.6
805,449 + ABZR87_RS19740 0.66 +0.6
805,450 - ABZR87_RS19740 0.66 +0.8
805,450 - ABZR87_RS19740 0.66 +0.7
805,450 - ABZR87_RS19740 0.66 -0.5
805,520 - ABZR87_RS19740 0.83 +0.8
805,628 + -2.0
805,628 + -0.5
805,628 + -0.3
805,628 + -0.5
805,628 + +0.5
805,628 + -0.0
805,628 + -0.1
805,629 - -0.8
805,629 - +0.1
805,629 - +0.5
805,780 + ABZR87_RS19745 0.27 -0.2
805,780 + ABZR87_RS19745 0.27 -0.2
805,780 + ABZR87_RS19745 0.27 -0.1
805,927 + ABZR87_RS19745 0.58 +0.4
805,928 - ABZR87_RS19745 0.58 -1.6
805,928 - ABZR87_RS19745 0.58 -2.5
805,999 + ABZR87_RS19745 0.73 -0.3
806,000 - ABZR87_RS19745 0.74 -0.0
806,000 - ABZR87_RS19745 0.74 +1.2
806,008 + ABZR87_RS19745 0.75 +0.5
806,091 - -0.8
806,138 - +0.6
806,185 - +0.8
806,290 + ABZR87_RS19750 0.22 -2.5
806,541 + ABZR87_RS19750 0.55 -0.0
806,541 + ABZR87_RS19750 0.55 -0.7
806,542 - ABZR87_RS19750 0.56 -2.5
806,590 - ABZR87_RS19750 0.62 -0.1
806,745 + ABZR87_RS19750 0.82 -0.8
806,746 - ABZR87_RS19750 0.82 -0.8
806,794 - ABZR87_RS19750 0.89 +0.1
807,028 + ABZR87_RS19755 0.19 +0.6
807,029 - ABZR87_RS19755 0.19 +0.5
807,029 - ABZR87_RS19755 0.19 -1.3
807,029 - ABZR87_RS19755 0.19 +1.8
807,029 - ABZR87_RS19755 0.19 +1.3
807,062 + ABZR87_RS19755 0.23 -0.4

Or see this region's nucleotide sequence