Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17245

Experiment: soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17240 and ABZR87_RS17245 are separated by 77 nucleotidesABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotidesABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotides ABZR87_RS17240: ABZR87_RS17240 - alkyl hydroperoxide reductase subunit F, at 225,685 to 227,259 _RS17240 ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775 _RS17250 ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.372 kb on + strand, within ABZR87_RS17240at 226.693 kb on + strand, within ABZR87_RS17240at 226.694 kb on - strand, within ABZR87_RS17240at 226.714 kb on + strand, within ABZR87_RS17240at 226.714 kb on + strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.969 kb on + strand, within ABZR87_RS17240at 226.969 kb on + strand, within ABZR87_RS17240at 227.165 kb on - strandat 227.282 kb on - strandat 227.301 kb on + strandat 227.302 kb on - strandat 227.587 kb on + strand, within ABZR87_RS17245at 227.587 kb on + strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.644 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 228.285 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.517 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.612 kb on - strand, within ABZR87_RS17250at 228.620 kb on + strand, within ABZR87_RS17250at 228.623 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.669 kb on - strand, within ABZR87_RS17250at 228.746 kb on + strandat 228.747 kb on - strandat 228.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB
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226,372 + ABZR87_RS17240 0.44 +0.6
226,693 + ABZR87_RS17240 0.64 -1.1
226,694 - ABZR87_RS17240 0.64 +1.1
226,714 + ABZR87_RS17240 0.65 -0.3
226,714 + ABZR87_RS17240 0.65 -0.8
226,715 - ABZR87_RS17240 0.65 -1.4
226,715 - ABZR87_RS17240 0.65 +1.2
226,715 - ABZR87_RS17240 0.65 -3.0
226,969 + ABZR87_RS17240 0.82 +0.3
226,969 + ABZR87_RS17240 0.82 +0.2
227,165 - -1.8
227,282 - +0.5
227,301 + -0.2
227,302 - -0.9
227,587 + ABZR87_RS17245 0.28 -0.2
227,587 + ABZR87_RS17245 0.28 +0.8
227,588 - ABZR87_RS17245 0.28 +0.8
227,588 - ABZR87_RS17245 0.28 -0.3
227,644 + ABZR87_RS17245 0.35 -0.4
227,821 + ABZR87_RS17245 0.55 +0.1
227,821 + ABZR87_RS17245 0.55 +0.4
228,285 + +0.4
228,335 + -0.1
228,335 + -0.6
228,335 + -0.1
228,335 + -0.2
228,335 + -0.6
228,335 + +0.8
228,335 + +1.2
228,335 + +0.0
228,335 + +0.2
228,335 + -0.4
228,336 - -1.1
228,336 - -1.0
228,336 - -0.2
228,336 - -1.7
228,336 - -0.3
228,517 + ABZR87_RS17250 0.43 -2.8
228,545 + ABZR87_RS17250 0.49 -0.3
228,545 + ABZR87_RS17250 0.49 +0.7
228,545 + ABZR87_RS17250 0.49 -2.0
228,545 + ABZR87_RS17250 0.49 +0.3
228,545 + ABZR87_RS17250 0.49 +0.2
228,546 - ABZR87_RS17250 0.50 -0.4
228,546 - ABZR87_RS17250 0.50 -2.8
228,546 - ABZR87_RS17250 0.50 -0.6
228,546 - ABZR87_RS17250 0.50 +2.5
228,611 + ABZR87_RS17250 0.64 +0.3
228,611 + ABZR87_RS17250 0.64 -0.0
228,611 + ABZR87_RS17250 0.64 -1.1
228,612 - ABZR87_RS17250 0.64 +0.2
228,620 + ABZR87_RS17250 0.66 -0.9
228,623 + ABZR87_RS17250 0.66 -0.9
228,668 + ABZR87_RS17250 0.76 +0.1
228,668 + ABZR87_RS17250 0.76 +0.4
228,668 + ABZR87_RS17250 0.76 -0.7
228,668 + ABZR87_RS17250 0.76 +1.0
228,669 - ABZR87_RS17250 0.77 -0.7
228,746 + +0.1
228,747 - -0.3
228,747 - -0.7

Or see this region's nucleotide sequence