Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16790

Experiment: soil sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16780 and ABZR87_RS16785 are separated by 53 nucleotidesABZR87_RS16785 and ABZR87_RS16790 are separated by 37 nucleotidesABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotidesABZR87_RS16795 and ABZR87_RS16800 are separated by 171 nucleotides ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865 _RS16780 ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308 _RS16785 ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819 _RS16790 ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 ABZR87_RS16800: ABZR87_RS16800 - RidA family protein, at 125,612 to 126,010 _RS16800 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 123.389 kb on - strandat 123.507 kb on + strandat 123.581 kb on + strandat 123.581 kb on + strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.732 kb on - strandat 123.760 kb on + strandat 123.830 kb on + strandat 123.831 kb on - strandat 123.918 kb on + strandat 123.918 kb on + strandat 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.214 kb on - strand, within ABZR87_RS16785at 124.244 kb on + strand, within ABZR87_RS16785at 124.306 kb on + strandat 124.306 kb on + strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.496 kb on + strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.761 kb on - strand, within ABZR87_RS16790at 124.772 kb on + strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.948 kb on - strandat 125.319 kb on + strand, within ABZR87_RS16795at 125.320 kb on - strand, within ABZR87_RS16795at 125.377 kb on - strand, within ABZR87_RS16795at 125.409 kb on + strandat 125.409 kb on + strandat 125.409 kb on + strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.568 kb on + strandat 125.569 kb on - strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.596 kb on - strandat 125.596 kb on - strandat 125.665 kb on - strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB
remove
123,389 - +1.5
123,507 + -0.3
123,581 + +0.6
123,581 + +0.0
123,582 - +3.2
123,582 - -0.5
123,582 - -0.2
123,582 - -0.3
123,582 - -0.8
123,731 + -0.1
123,731 + +0.3
123,731 + -0.0
123,731 + +0.6
123,731 + -0.5
123,732 - -1.5
123,760 + +0.5
123,830 + -0.0
123,831 - -1.1
123,918 + -0.6
123,918 + +0.2
124,108 + ABZR87_RS16785 0.48 -0.0
124,108 + ABZR87_RS16785 0.48 +0.6
124,108 + ABZR87_RS16785 0.48 -0.5
124,108 + ABZR87_RS16785 0.48 -0.5
124,109 - ABZR87_RS16785 0.49 +0.5
124,109 - ABZR87_RS16785 0.49 -0.5
124,109 - ABZR87_RS16785 0.49 +0.1
124,168 + ABZR87_RS16785 0.64 +0.6
124,168 + ABZR87_RS16785 0.64 -0.4
124,168 + ABZR87_RS16785 0.64 +0.2
124,168 + ABZR87_RS16785 0.64 +0.5
124,168 + ABZR87_RS16785 0.64 -1.9
124,169 - ABZR87_RS16785 0.64 +0.3
124,169 - ABZR87_RS16785 0.64 -0.8
124,214 - ABZR87_RS16785 0.76 +0.6
124,244 + ABZR87_RS16785 0.83 +0.8
124,306 + +0.3
124,306 + -0.0
124,307 - -0.0
124,307 - +0.2
124,307 - +1.0
124,307 - +0.7
124,496 + ABZR87_RS16790 0.32 -0.3
124,497 - ABZR87_RS16790 0.32 -0.8
124,497 - ABZR87_RS16790 0.32 -0.3
124,638 - ABZR87_RS16790 0.62 +0.2
124,638 - ABZR87_RS16790 0.62 +1.2
124,638 - ABZR87_RS16790 0.62 -0.3
124,638 - ABZR87_RS16790 0.62 -0.3
124,638 - ABZR87_RS16790 0.62 +0.1
124,638 - ABZR87_RS16790 0.62 +0.0
124,639 + ABZR87_RS16790 0.62 -0.4
124,639 + ABZR87_RS16790 0.62 +0.4
124,639 + ABZR87_RS16790 0.62 +0.4
124,640 - ABZR87_RS16790 0.62 -0.1
124,640 - ABZR87_RS16790 0.62 -0.1
124,640 - ABZR87_RS16790 0.62 -0.9
124,640 - ABZR87_RS16790 0.62 +0.1
124,640 - ABZR87_RS16790 0.62 +0.5
124,640 - ABZR87_RS16790 0.62 +0.6
124,671 - ABZR87_RS16790 0.69 -0.4
124,671 - ABZR87_RS16790 0.69 +1.0
124,671 - ABZR87_RS16790 0.69 +0.7
124,760 + ABZR87_RS16790 0.87 +0.5
124,760 + ABZR87_RS16790 0.87 +1.0
124,760 + ABZR87_RS16790 0.87 +0.5
124,760 + ABZR87_RS16790 0.87 +0.1
124,761 - ABZR87_RS16790 0.88 +0.5
124,772 + -0.2
124,773 - -2.1
124,773 - +0.9
124,773 - +0.3
124,773 - -0.5
124,948 - +0.3
125,319 + ABZR87_RS16795 0.75 -1.0
125,320 - ABZR87_RS16795 0.75 -0.7
125,377 - ABZR87_RS16795 0.87 -0.1
125,409 + -0.0
125,409 + -0.1
125,409 + -0.4
125,410 - +0.1
125,410 - -0.1
125,410 - -0.6
125,568 + -0.4
125,569 - +0.1
125,595 + -0.4
125,595 + -0.3
125,595 + -0.9
125,596 - +2.0
125,596 - -0.7
125,665 - ABZR87_RS16800 0.13 +0.6
125,770 + ABZR87_RS16800 0.40 +0.5
125,770 + ABZR87_RS16800 0.40 +1.2

Or see this region's nucleotide sequence