Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13100

Experiment: soil sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil sample 2; outgrowth in LB
2,778,750	+		ABZR87_RS13090	0.43	+0.4
2,778,750	+		ABZR87_RS13090	0.43	-0.2
2,778,751	-		ABZR87_RS13090	0.43	+0.2
2,778,751	-		ABZR87_RS13090	0.43	-1.0
2,778,751	-		ABZR87_RS13090	0.43	+0.6
2,778,763	-		ABZR87_RS13090	0.45	-0.9
2,778,763	-		ABZR87_RS13090	0.45	-0.7
2,778,763	-		ABZR87_RS13090	0.45	-0.1
2,778,795	-		ABZR87_RS13090	0.50	-0.3
2,778,795	-		ABZR87_RS13090	0.50	-0.9
2,778,795	-		ABZR87_RS13090	0.50	-0.3
2,778,924	+		ABZR87_RS13090	0.71	+0.7
2,778,924	+		ABZR87_RS13090	0.71	-1.8
2,778,925	-		ABZR87_RS13090	0.71	-1.4
2,778,980	-		ABZR87_RS13090	0.80	-0.3
2,779,004	+		ABZR87_RS13090	0.84	+0.0
2,779,076	+				+1.1
2,779,076	+				+0.5
2,779,076	+				+0.9
2,779,076	+				-0.6
2,779,077	-				+0.1
2,779,077	-				+1.1
2,779,077	-				-0.6
2,779,077	-				-0.2
2,779,077	-				+0.6
2,779,101	-				+0.4
2,779,127	+				+2.4
2,779,127	+				+0.2
2,779,127	+				+1.6
2,779,128	-				+0.1
2,779,128	-				+0.9
2,779,260	+		ABZR87_RS13095	0.28	+0.6
2,779,260	+		ABZR87_RS13095	0.28	-0.3
2,779,260	+		ABZR87_RS13095	0.28	+1.5
2,779,260	+		ABZR87_RS13095	0.28	+0.3
2,779,261	-		ABZR87_RS13095	0.28	+0.3
2,779,261	-		ABZR87_RS13095	0.28	-0.5
2,779,261	-		ABZR87_RS13095	0.28	+0.1
2,779,261	-		ABZR87_RS13095	0.28	-1.4
2,779,358	+		ABZR87_RS13095	0.49	-0.2
2,779,359	-		ABZR87_RS13095	0.50	+2.0
2,779,359	-		ABZR87_RS13095	0.50	+0.1
2,779,359	-		ABZR87_RS13095	0.50	+0.8
2,779,408	-		ABZR87_RS13095	0.60	-0.1
2,779,408	-		ABZR87_RS13095	0.60	+1.4
2,779,580	+				-0.4
2,779,580	+				+0.3
2,779,590	+				-0.8
2,779,590	+				-0.2
2,779,591	-				+0.0
2,779,591	-				-1.0
2,779,603	+				-0.4
2,779,603	+				+1.1
2,779,627	+				+0.3
2,779,627	+				-0.3
2,779,627	+				+0.0
2,779,638	+				-1.0
2,779,639	-				+0.2
2,779,639	-				-0.6
2,779,659	+				+0.1
2,779,660	-				-0.3
2,779,667	+				+0.6
2,779,667	+				+0.1
2,779,699	+				+0.1
2,779,700	-				+1.0
2,779,708	+				+0.3
2,779,708	+				-0.0
2,779,709	-				+0.6
2,779,738	+				-0.7
2,779,739	-				-0.7
2,779,843	+				-0.0
2,779,843	+				-0.4
2,779,844	-				-0.3
2,779,844	-				-2.0
2,779,844	-				+0.5
2,779,844	-				-0.0
2,779,844	-				+0.2
2,779,844	-				+0.4
2,779,844	-				-0.6
2,779,857	-		ABZR87_RS13100	0.11	+0.4
2,779,857	-		ABZR87_RS13100	0.11	+0.8
2,779,942	-		ABZR87_RS13100	0.19	-0.3
2,780,022	+		ABZR87_RS13100	0.27	+0.0
2,780,023	-		ABZR87_RS13100	0.27	+0.4
2,780,146	+		ABZR87_RS13100	0.38	+1.2
2,780,146	+		ABZR87_RS13100	0.38	+1.4
2,780,146	+		ABZR87_RS13100	0.38	+0.8
2,780,146	+		ABZR87_RS13100	0.38	-0.2
2,780,146	+		ABZR87_RS13100	0.38	+0.3
2,780,146	+		ABZR87_RS13100	0.38	-1.4
2,780,147	-		ABZR87_RS13100	0.38	+1.4
2,780,147	-		ABZR87_RS13100	0.38	+0.8
2,780,147	-		ABZR87_RS13100	0.38	-0.0
2,780,147	-		ABZR87_RS13100	0.38	-0.2
2,780,147	-		ABZR87_RS13100	0.38	-0.2
2,780,160	+		ABZR87_RS13100	0.39	-0.3
2,780,161	-		ABZR87_RS13100	0.39	+0.8
2,780,161	-		ABZR87_RS13100	0.39	+0.4
2,780,231	-		ABZR87_RS13100	0.46	-0.2
2,780,275	+		ABZR87_RS13100	0.50	+1.2
2,780,275	+		ABZR87_RS13100	0.50	+0.5
2,780,275	+		ABZR87_RS13100	0.50	-0.6
2,780,276	-		ABZR87_RS13100	0.50	+0.2
2,780,276	-		ABZR87_RS13100	0.50	+0.8
2,780,276	-		ABZR87_RS13100	0.50	+0.0
2,780,276	-		ABZR87_RS13100	0.50	+0.2
2,780,440	+		ABZR87_RS13100	0.65	+0.5
2,780,441	-		ABZR87_RS13100	0.66	+0.2
2,780,441	-		ABZR87_RS13100	0.66	+1.1
2,780,441	-		ABZR87_RS13100	0.66	+0.2
2,780,557	+		ABZR87_RS13100	0.76	-0.1
2,780,557	+		ABZR87_RS13100	0.76	+0.2
2,780,557	+		ABZR87_RS13100	0.76	+0.0
2,780,558	-		ABZR87_RS13100	0.76	-0.1
2,780,558	-		ABZR87_RS13100	0.76	+0.3
2,780,558	-		ABZR87_RS13100	0.76	+1.0
2,780,558	-		ABZR87_RS13100	0.76	-0.0
2,780,583	+		ABZR87_RS13100	0.79	-0.1
2,780,584	-		ABZR87_RS13100	0.79	-0.2
2,780,584	-		ABZR87_RS13100	0.79	-0.3
2,780,593	-		ABZR87_RS13100	0.80	-0.2
2,780,593	-		ABZR87_RS13100	0.80	+0.5
2,780,593	-		ABZR87_RS13100	0.80	-1.5
2,780,601	-		ABZR87_RS13100	0.80	+0.2
2,780,634	+		ABZR87_RS13100	0.84	+0.5
2,780,635	-		ABZR87_RS13100	0.84	+1.0
2,780,648	+		ABZR87_RS13100	0.85	-1.0
2,780,648	+		ABZR87_RS13100	0.85	+0.6
2,780,649	-		ABZR87_RS13100	0.85	+0.7
2,780,688	+		ABZR87_RS13100	0.89	-0.1
2,780,688	+		ABZR87_RS13100	0.89	+0.4
2,780,689	-		ABZR87_RS13100	0.89	-3.1
2,780,689	-		ABZR87_RS13100	0.89	+0.7
2,780,689	-		ABZR87_RS13100	0.89	+0.5
2,780,689	-		ABZR87_RS13100	0.89	-0.5
2,780,846	+				+0.2
2,780,846	+				+0.5
2,780,846	+				-0.1
2,780,846	+				-0.3
2,780,846	+				-0.8
2,780,847	-				+1.0
2,780,887	+				-0.9
2,780,888	-				-0.5
2,780,888	-				+0.5
2,780,888	-				-0.1
2,780,889	+				-0.7
2,780,890	-				-0.2
2,780,890	-				+1.4
2,780,918	+				+0.3
2,780,943	+				-1.2
2,780,943	+				-1.4
2,780,944	-				+0.8
2,780,944	-				-0.5
2,780,945	-				+0.0
2,781,001	+		ABZR87_RS13105	0.22	-0.8
2,781,001	+		ABZR87_RS13105	0.22	+0.6
2,781,001	+		ABZR87_RS13105	0.22	+0.4
2,781,004	-		ABZR87_RS13105	0.23	+0.4
2,781,018	-		ABZR87_RS13105	0.27	+1.0
2,781,070	+		ABZR87_RS13105	0.42	-0.2
2,781,070	+		ABZR87_RS13105	0.42	+0.7
2,781,071	-		ABZR87_RS13105	0.43	+0.0
2,781,095	+		ABZR87_RS13105	0.50	-1.1
2,781,095	+		ABZR87_RS13105	0.50	-0.9
2,781,095	+		ABZR87_RS13105	0.50	+0.3
2,781,095	+		ABZR87_RS13105	0.50	+0.2
2,781,095	+		ABZR87_RS13105	0.50	-0.1
2,781,096	-		ABZR87_RS13105	0.50	+0.7
2,781,096	-		ABZR87_RS13105	0.50	-1.2
2,781,236	+				-1.6
2,781,237	-				-0.2
2,781,280	+				+0.2
2,781,281	-				+0.8
2,781,296	+				+0.5
2,781,296	+				-0.4
2,781,296	+				+0.1
2,781,297	-				+0.1
2,781,384	+				+0.7
2,781,384	+				-0.4
2,781,384	+				+0.4
2,781,488	-				+0.6
2,781,488	-				+0.5
2,781,515	-				+0.1
2,781,534	-				-0.2
2,781,534	-				-0.1
2,781,546	-				-0.4
2,781,546	-				-0.9
2,781,586	-				-0.9
2,781,586	-				+0.1
2,781,586	-				-0.2
2,781,597	-				-0.8
2,781,607	+				+1.0
2,781,607	+				-0.9
2,781,607	+				-0.2
2,781,607	+				+0.1
2,781,607	+				+0.9
2,781,608	-				-0.9
2,781,608	-				+0.5
2,781,608	-				-0.6
2,781,658	+				-0.6
2,781,659	-				+0.5
2,781,659	-				-0.4
2,781,696	+				+0.3
2,781,697	-				+0.2
2,781,697	-				-0.0
2,781,697	-				-1.6
2,781,697	-				-0.3
2,781,702	+				-0.0