Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06390

Experiment: soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06385 and ABZR87_RS06390 are separated by 85 nucleotidesABZR87_RS06390 and ABZR87_RS06395 are separated by 72 nucleotidesABZR87_RS06395 and ABZR87_RS06400 are separated by 101 nucleotides ABZR87_RS06385: ABZR87_RS06385 - CHASE3 domain-containing protein, at 1,361,596 to 1,363,038 _RS06385 ABZR87_RS06390: ABZR87_RS06390 - entericidin A/B family lipoprotein, at 1,363,124 to 1,363,264 _RS06390 ABZR87_RS06395: ABZR87_RS06395 - response regulator, at 1,363,337 to 1,363,777 _RS06395 ABZR87_RS06400: ABZR87_RS06400 - response regulator transcription factor, at 1,363,879 to 1,364,511 _RS06400 Position (kb) 1363 1364Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1362.282 kb on + strand, within ABZR87_RS06385at 1362.606 kb on + strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.667 kb on + strand, within ABZR87_RS06385at 1362.668 kb on - strand, within ABZR87_RS06385at 1362.668 kb on - strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1363.036 kb on + strandat 1363.037 kb on - strandat 1363.037 kb on - strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.503 kb on + strand, within ABZR87_RS06395at 1363.503 kb on + strand, within ABZR87_RS06395at 1363.504 kb on - strand, within ABZR87_RS06395at 1363.504 kb on - strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.687 kb on - strand, within ABZR87_RS06395at 1363.687 kb on - strand, within ABZR87_RS06395at 1363.789 kb on - strandat 1363.812 kb on - strandat 1363.812 kb on - strandat 1363.812 kb on - strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.831 kb on - strandat 1363.831 kb on - strandat 1363.880 kb on + strandat 1363.881 kb on - strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.910 kb on + strandat 1363.910 kb on + strandat 1363.910 kb on + strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.964 kb on + strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.141 kb on + strand, within ABZR87_RS06400at 1364.142 kb on - strand, within ABZR87_RS06400at 1364.142 kb on - strand, within ABZR87_RS06400at 1364.142 kb on - strand, within ABZR87_RS06400at 1364.164 kb on - strand, within ABZR87_RS06400at 1364.210 kb on + strand, within ABZR87_RS06400at 1364.210 kb on + strand, within ABZR87_RS06400at 1364.246 kb on + strand, within ABZR87_RS06400at 1364.246 kb on + strand, within ABZR87_RS06400at 1364.247 kb on - strand, within ABZR87_RS06400

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB
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1,362,282 + ABZR87_RS06385 0.48 -4.6
1,362,606 + ABZR87_RS06385 0.70 -3.3
1,362,607 - ABZR87_RS06385 0.70 -2.7
1,362,607 - ABZR87_RS06385 0.70 -4.5
1,362,607 - ABZR87_RS06385 0.70 +0.8
1,362,667 + ABZR87_RS06385 0.74 -1.0
1,362,668 - ABZR87_RS06385 0.74 -2.2
1,362,668 - ABZR87_RS06385 0.74 -2.0
1,362,706 + ABZR87_RS06385 0.77 -3.7
1,362,706 + ABZR87_RS06385 0.77 -4.4
1,362,706 + ABZR87_RS06385 0.77 -3.1
1,363,036 + -0.2
1,363,037 - +0.5
1,363,037 - -0.6
1,363,125 + +0.4
1,363,125 + -2.5
1,363,125 + +0.2
1,363,125 + -0.4
1,363,125 + +1.7
1,363,126 - +1.5
1,363,126 - +1.0
1,363,126 - +0.4
1,363,126 - -0.3
1,363,228 + ABZR87_RS06390 0.74 +0.3
1,363,228 + ABZR87_RS06390 0.74 +0.1
1,363,228 + ABZR87_RS06390 0.74 +0.0
1,363,228 + ABZR87_RS06390 0.74 -0.1
1,363,228 + ABZR87_RS06390 0.74 +0.4
1,363,228 + ABZR87_RS06390 0.74 +0.2
1,363,228 + ABZR87_RS06390 0.74 +1.3
1,363,228 + ABZR87_RS06390 0.74 -0.5
1,363,228 + ABZR87_RS06390 0.74 +0.4
1,363,228 + ABZR87_RS06390 0.74 -1.0
1,363,229 - ABZR87_RS06390 0.74 -0.9
1,363,229 - ABZR87_RS06390 0.74 -0.6
1,363,229 - ABZR87_RS06390 0.74 -0.5
1,363,229 - ABZR87_RS06390 0.74 -0.3
1,363,229 - ABZR87_RS06390 0.74 +0.7
1,363,229 - ABZR87_RS06390 0.74 +0.1
1,363,229 - ABZR87_RS06390 0.74 -0.2
1,363,229 - ABZR87_RS06390 0.74 +1.6
1,363,229 - ABZR87_RS06390 0.74 +0.2
1,363,229 - ABZR87_RS06390 0.74 -0.5
1,363,229 - ABZR87_RS06390 0.74 -0.6
1,363,229 - ABZR87_RS06390 0.74 +0.7
1,363,229 - ABZR87_RS06390 0.74 +0.0
1,363,443 + ABZR87_RS06395 0.24 +1.4
1,363,443 + ABZR87_RS06395 0.24 +1.9
1,363,443 + ABZR87_RS06395 0.24 +0.5
1,363,443 + ABZR87_RS06395 0.24 +1.1
1,363,444 - ABZR87_RS06395 0.24 -0.3
1,363,444 - ABZR87_RS06395 0.24 +2.1
1,363,444 - ABZR87_RS06395 0.24 +0.8
1,363,444 - ABZR87_RS06395 0.24 +2.0
1,363,503 + ABZR87_RS06395 0.38 +2.3
1,363,503 + ABZR87_RS06395 0.38 -1.4
1,363,504 - ABZR87_RS06395 0.38 +1.0
1,363,504 - ABZR87_RS06395 0.38 +0.9
1,363,602 + ABZR87_RS06395 0.60 +2.8
1,363,602 + ABZR87_RS06395 0.60 +2.1
1,363,602 + ABZR87_RS06395 0.60 +1.6
1,363,602 + ABZR87_RS06395 0.60 +1.5
1,363,602 + ABZR87_RS06395 0.60 +0.8
1,363,602 + ABZR87_RS06395 0.60 +0.6
1,363,603 - ABZR87_RS06395 0.60 +0.7
1,363,603 - ABZR87_RS06395 0.60 +0.2
1,363,603 - ABZR87_RS06395 0.60 +1.7
1,363,603 - ABZR87_RS06395 0.60 +0.4
1,363,603 - ABZR87_RS06395 0.60 +1.0
1,363,603 - ABZR87_RS06395 0.60 +2.5
1,363,603 - ABZR87_RS06395 0.60 +2.4
1,363,686 + ABZR87_RS06395 0.79 +0.8
1,363,686 + ABZR87_RS06395 0.79 +1.1
1,363,686 + ABZR87_RS06395 0.79 +1.5
1,363,686 + ABZR87_RS06395 0.79 +0.3
1,363,687 - ABZR87_RS06395 0.79 +0.4
1,363,687 - ABZR87_RS06395 0.79 -0.3
1,363,789 - +0.0
1,363,812 - -1.1
1,363,812 - -0.3
1,363,812 - +0.5
1,363,826 + -1.0
1,363,826 + -0.3
1,363,826 + +0.4
1,363,826 + -0.1
1,363,826 + -0.2
1,363,826 + -0.2
1,363,827 - +0.6
1,363,827 - +0.5
1,363,827 - +0.3
1,363,827 - +0.1
1,363,827 - +0.0
1,363,827 - +0.2
1,363,827 - +0.3
1,363,827 - -1.1
1,363,827 - -0.3
1,363,827 - +0.3
1,363,827 - -0.1
1,363,827 - +0.1
1,363,830 + -0.9
1,363,830 + -1.1
1,363,830 + -0.1
1,363,830 + -0.1
1,363,831 - -0.0
1,363,831 - +1.0
1,363,880 + +0.1
1,363,881 - +0.4
1,363,907 + -1.7
1,363,907 + -2.3
1,363,907 + -2.6
1,363,907 + -3.8
1,363,908 - -1.7
1,363,908 - -2.7
1,363,908 - -3.5
1,363,908 - -3.1
1,363,908 - -2.9
1,363,910 + -2.7
1,363,910 + -2.7
1,363,910 + -4.3
1,363,911 - -2.3
1,363,911 - -2.3
1,363,911 - -3.0
1,363,911 - -3.5
1,363,964 + ABZR87_RS06400 0.13 -2.8
1,363,965 - ABZR87_RS06400 0.14 -2.0
1,363,965 - ABZR87_RS06400 0.14 -2.8
1,363,965 - ABZR87_RS06400 0.14 -4.1
1,364,141 + ABZR87_RS06400 0.41 -3.1
1,364,141 + ABZR87_RS06400 0.41 -3.1
1,364,141 + ABZR87_RS06400 0.41 -1.1
1,364,141 + ABZR87_RS06400 0.41 -2.7
1,364,141 + ABZR87_RS06400 0.41 -2.4
1,364,141 + ABZR87_RS06400 0.41 -3.6
1,364,142 - ABZR87_RS06400 0.42 -4.8
1,364,142 - ABZR87_RS06400 0.42 -1.6
1,364,142 - ABZR87_RS06400 0.42 -4.8
1,364,164 - ABZR87_RS06400 0.45 -4.7
1,364,210 + ABZR87_RS06400 0.52 -3.7
1,364,210 + ABZR87_RS06400 0.52 -3.0
1,364,246 + ABZR87_RS06400 0.58 -2.3
1,364,246 + ABZR87_RS06400 0.58 -2.9
1,364,247 - ABZR87_RS06400 0.58 -3.0

Or see this region's nucleotide sequence