Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3602

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3600 and Rru_A3601 are separated by 22 nucleotidesRru_A3601 and Rru_A3602 overlap by 4 nucleotidesRru_A3602 and Rru_A3603 overlap by 14 nucleotidesRru_A3603 and Rru_A3604 are separated by 106 nucleotides Rru_A3600: Rru_A3600 - Heat shock protein HslU (NCBI), at 4,141,035 to 4,142,342 _A3600 Rru_A3601: Rru_A3601 - Transcriptional Regulator, XRE family (NCBI), at 4,142,365 to 4,142,739 _A3601 Rru_A3602: Rru_A3602 - Smr protein/MutS2-like (NCBI), at 4,142,736 to 4,143,326 _A3602 Rru_A3603: Rru_A3603 - Protein of unknown function DUF162 (NCBI), at 4,143,313 to 4,143,987 _A3603 Rru_A3604: Rru_A3604 - hypothetical protein (NCBI), at 4,144,094 to 4,144,705 _A3604 Position (kb) 4142 4143 4144Strain fitness (log2 ratio) -2 -1 0 1 2at 4141.891 kb on - strand, within Rru_A3600at 4141.891 kb on - strand, within Rru_A3600at 4141.891 kb on - strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.073 kb on + strand, within Rru_A3600at 4142.074 kb on - strand, within Rru_A3600at 4142.074 kb on - strand, within Rru_A3600at 4142.198 kb on + strand, within Rru_A3600at 4142.198 kb on + strand, within Rru_A3600at 4142.198 kb on + strand, within Rru_A3600at 4142.199 kb on - strand, within Rru_A3600at 4142.340 kb on + strandat 4142.350 kb on + strandat 4142.351 kb on - strandat 4142.773 kb on + strandat 4142.773 kb on + strandat 4142.773 kb on + strandat 4142.773 kb on + strandat 4142.774 kb on - strandat 4142.774 kb on - strandat 4142.774 kb on - strandat 4142.774 kb on - strandat 4142.774 kb on - strandat 4143.122 kb on + strand, within Rru_A3602at 4143.123 kb on - strand, within Rru_A3602at 4143.310 kb on + strandat 4143.311 kb on - strandat 4143.311 kb on - strandat 4143.314 kb on + strandat 4143.314 kb on + strandat 4143.314 kb on + strandat 4143.314 kb on + strandat 4143.315 kb on - strandat 4143.315 kb on - strandat 4143.315 kb on - strandat 4143.339 kb on + strandat 4143.339 kb on + strandat 4143.340 kb on - strandat 4143.340 kb on - strandat 4143.340 kb on - strandat 4143.478 kb on + strand, within Rru_A3603at 4143.478 kb on + strand, within Rru_A3603at 4143.726 kb on + strand, within Rru_A3603at 4143.727 kb on - strand, within Rru_A3603at 4143.727 kb on - strand, within Rru_A3603at 4143.740 kb on + strand, within Rru_A3603at 4143.969 kb on + strandat 4143.988 kb on - strandat 4143.988 kb on - strandat 4144.018 kb on + strandat 4144.279 kb on + strand, within Rru_A3604

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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4,141,891 - Rru_A3600 0.65 -0.5
4,141,891 - Rru_A3600 0.65 -2.1
4,141,891 - Rru_A3600 0.65 -1.4
4,142,073 + Rru_A3600 0.79 +0.6
4,142,073 + Rru_A3600 0.79 +0.9
4,142,073 + Rru_A3600 0.79 +1.4
4,142,073 + Rru_A3600 0.79 +0.2
4,142,073 + Rru_A3600 0.79 -0.8
4,142,073 + Rru_A3600 0.79 -2.1
4,142,073 + Rru_A3600 0.79 +0.4
4,142,074 - Rru_A3600 0.79 -1.0
4,142,074 - Rru_A3600 0.79 -0.1
4,142,198 + Rru_A3600 0.89 -0.5
4,142,198 + Rru_A3600 0.89 -0.1
4,142,198 + Rru_A3600 0.89 -0.8
4,142,199 - Rru_A3600 0.89 -1.3
4,142,340 + +0.2
4,142,350 + -0.8
4,142,351 - +0.4
4,142,773 + -1.1
4,142,773 + -0.1
4,142,773 + +0.3
4,142,773 + -0.8
4,142,774 - -0.3
4,142,774 - +0.9
4,142,774 - -0.1
4,142,774 - -0.8
4,142,774 - +0.4
4,143,122 + Rru_A3602 0.65 -2.6
4,143,123 - Rru_A3602 0.65 -1.0
4,143,310 + -2.1
4,143,311 - -1.2
4,143,311 - -0.4
4,143,314 + +0.3
4,143,314 + -1.1
4,143,314 + +0.1
4,143,314 + +1.9
4,143,315 - +0.1
4,143,315 - -0.5
4,143,315 - -0.4
4,143,339 + -0.4
4,143,339 + -1.6
4,143,340 - +0.2
4,143,340 - +0.6
4,143,340 - +0.2
4,143,478 + Rru_A3603 0.24 +0.3
4,143,478 + Rru_A3603 0.24 +0.5
4,143,726 + Rru_A3603 0.61 -1.4
4,143,727 - Rru_A3603 0.61 +1.8
4,143,727 - Rru_A3603 0.61 -0.2
4,143,740 + Rru_A3603 0.63 -0.6
4,143,969 + -0.3
4,143,988 - -0.5
4,143,988 - -1.5
4,144,018 + -0.3
4,144,279 + Rru_A3604 0.30 -0.3

Or see this region's nucleotide sequence