Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3275 and Rru_A3276 are separated by 66 nucleotides Rru_A3276 and Rru_A3277 are separated by 2 nucleotides Rru_A3277 and Rru_A3278 are separated by 229 nucleotides
Rru_A3275: Rru_A3275 - Hsp33 protein (NCBI), at 3,772,689 to 3,773,624
_A3275
Rru_A3276: Rru_A3276 - Ornithine carbamoyltransferase (NCBI), at 3,773,691 to 3,774,617
_A3276
Rru_A3277: Rru_A3277 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 3,774,620 to 3,775,810
_A3277
Rru_A3278: Rru_A3278 - ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI), at 3,776,040 to 3,777,023
_A3278
Position (kb)
3774
3775
3776 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3773.630 kb on + strand at 3773.693 kb on - strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.706 kb on - strand at 3773.991 kb on + strand, within Rru_A3276 at 3773.991 kb on + strand, within Rru_A3276 at 3773.992 kb on - strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.668 kb on + strand at 3775.010 kb on + strand, within Rru_A3277 at 3775.023 kb on + strand, within Rru_A3277 at 3775.023 kb on + strand, within Rru_A3277 at 3775.024 kb on - strand, within Rru_A3277 at 3775.215 kb on + strand, within Rru_A3277 at 3775.215 kb on + strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.826 kb on + strand at 3775.826 kb on + strand at 3775.827 kb on - strand at 3775.827 kb on - strand at 3775.834 kb on + strand at 3775.834 kb on + strand at 3775.897 kb on + strand at 3775.898 kb on - strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 3,773,630 + -0.1 3,773,693 - +0.3 3,773,705 + -5.3 3,773,705 + -3.7 3,773,705 + -0.7 3,773,705 + -1.9 3,773,706 - -2.7 3,773,991 + Rru_A3276 0.32 -3.9 3,773,991 + Rru_A3276 0.32 +0.1 3,773,992 - Rru_A3276 0.32 -2.7 3,774,316 + Rru_A3276 0.67 -5.1 3,774,316 + Rru_A3276 0.67 -5.1 3,774,316 + Rru_A3276 0.67 -3.3 3,774,316 + Rru_A3276 0.67 -4.9 3,774,316 + Rru_A3276 0.67 -3.8 3,774,668 + -4.4 3,775,010 + Rru_A3277 0.33 -2.5 3,775,023 + Rru_A3277 0.34 +0.5 3,775,023 + Rru_A3277 0.34 -1.0 3,775,024 - Rru_A3277 0.34 -2.5 3,775,215 + Rru_A3277 0.50 -3.4 3,775,215 + Rru_A3277 0.50 -3.9 3,775,216 - Rru_A3277 0.50 -3.8 3,775,216 - Rru_A3277 0.50 -4.2 3,775,216 - Rru_A3277 0.50 +0.2 3,775,780 - -4.0 3,775,780 - -3.6 3,775,780 - -5.6 3,775,826 + -3.9 3,775,826 + -1.5 3,775,827 - -3.2 3,775,827 - +0.5 3,775,834 + -0.0 3,775,834 + -1.4 3,775,897 + -3.9 3,775,898 - -0.5 3,775,928 + -0.0 3,775,928 + -0.1 3,775,928 + +0.1 3,775,928 + -0.3 3,775,928 + +0.4 3,775,928 + +0.8 3,775,985 - +1.3
Or see this region's nucleotide sequence