Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2767 and Rru_A2768 overlap by 8 nucleotides Rru_A2768 and Rru_A2769 are separated by 146 nucleotides Rru_A2769 and Rru_A2770 are separated by 5 nucleotides Rru_A2770 and Rru_A2771 are separated by 2 nucleotides
Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999
_A2767
Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624
_A2768
Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220
_A2769
Rru_A2770: Rru_A2770 - Uncharacterized conserved protein UCP032146 (NCBI), at 3,204,226 to 3,204,711
_A2770
Rru_A2771: Rru_A2771 - Histidinol dehydrogenase (NCBI), at 3,204,714 to 3,206,018
_A2771
Position (kb)
3203
3204
3205 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.975 kb on - strand at 3202.975 kb on - strand at 3203.676 kb on + strand at 3203.694 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.713 kb on - strand at 3204.277 kb on - strand, within Rru_A2770 at 3204.408 kb on - strand, within Rru_A2770 at 3204.428 kb on + strand, within Rru_A2770 at 3204.670 kb on - strand at 3204.670 kb on - strand at 3204.716 kb on - strand at 3204.953 kb on + strand, within Rru_A2771
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 3,202,974 + +2.1 3,202,974 + +0.6 3,202,974 + -0.2 3,202,974 + -0.4 3,202,975 - +0.3 3,202,975 - +0.9 3,203,676 + -2.3 3,203,694 + -1.4 3,203,712 + -0.8 3,203,712 + -0.8 3,203,712 + -2.2 3,203,713 - -0.7 3,204,277 - Rru_A2770 0.10 -1.2 3,204,408 - Rru_A2770 0.37 -1.1 3,204,428 + Rru_A2770 0.42 -0.1 3,204,670 - -0.8 3,204,670 - -0.2 3,204,716 - -0.6 3,204,953 + Rru_A2771 0.18 -0.7
Or see this region's nucleotide sequence