Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2769

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2767 and Rru_A2768 overlap by 8 nucleotidesRru_A2768 and Rru_A2769 are separated by 146 nucleotidesRru_A2769 and Rru_A2770 are separated by 5 nucleotidesRru_A2770 and Rru_A2771 are separated by 2 nucleotides Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999 _A2767 Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624 _A2768 Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220 _A2769 Rru_A2770: Rru_A2770 - Uncharacterized conserved protein UCP032146 (NCBI), at 3,204,226 to 3,204,711 _A2770 Rru_A2771: Rru_A2771 - Histidinol dehydrogenase (NCBI), at 3,204,714 to 3,206,018 _A2771 Position (kb) 3203 3204 3205Strain fitness (log2 ratio) -2 -1 0 1 2at 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.975 kb on - strandat 3202.975 kb on - strandat 3203.676 kb on + strandat 3203.694 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.713 kb on - strandat 3204.277 kb on - strand, within Rru_A2770at 3204.408 kb on - strand, within Rru_A2770at 3204.428 kb on + strand, within Rru_A2770at 3204.670 kb on - strandat 3204.670 kb on - strandat 3204.716 kb on - strandat 3204.953 kb on + strand, within Rru_A2771

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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3,202,974 + +2.1
3,202,974 + +0.6
3,202,974 + -0.2
3,202,974 + -0.4
3,202,975 - +0.3
3,202,975 - +0.9
3,203,676 + -2.3
3,203,694 + -1.4
3,203,712 + -0.8
3,203,712 + -0.8
3,203,712 + -2.2
3,203,713 - -0.7
3,204,277 - Rru_A2770 0.10 -1.2
3,204,408 - Rru_A2770 0.37 -1.1
3,204,428 + Rru_A2770 0.42 -0.1
3,204,670 - -0.8
3,204,670 - -0.2
3,204,716 - -0.6
3,204,953 + Rru_A2771 0.18 -0.7

Or see this region's nucleotide sequence