Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2147

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2146 and Rru_A2147 are separated by 91 nucleotidesRru_A2147 and Rru_A2148 are separated by 274 nucleotides Rru_A2146: Rru_A2146 - chemotaxis sensory transducer (NCBI), at 2,489,568 to 2,491,025 _A2146 Rru_A2147: Rru_A2147 - Penicillin-binding protein 1A (NCBI), at 2,491,117 to 2,493,612 _A2147 Rru_A2148: Rru_A2148 - N-acetylmuramoyl-L-alanine amidase (NCBI), at 2,493,887 to 2,495,455 _A2148 Position (kb) 2491 2492 2493 2494Strain fitness (log2 ratio) -2 -1 0 1at 2490.319 kb on + strand, within Rru_A2146at 2490.319 kb on + strand, within Rru_A2146at 2491.066 kb on - strandat 2491.092 kb on - strandat 2491.118 kb on + strandat 2491.118 kb on + strandat 2491.119 kb on - strandat 2491.119 kb on - strandat 2493.685 kb on - strandat 2493.742 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
2,490,319 + Rru_A2146 0.52 -1.9
2,490,319 + Rru_A2146 0.52 -0.1
2,491,066 - +0.4
2,491,092 - -2.4
2,491,118 + -0.2
2,491,118 + -0.0
2,491,119 - -0.8
2,491,119 - +0.2
2,493,685 - -0.9
2,493,742 - -0.3

Or see this region's nucleotide sequence