Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0777 and Rru_A0778 overlap by 4 nucleotides Rru_A0778 and Rru_A0779 are separated by 145 nucleotides
Rru_A0777: Rru_A0777 - D-lactate dehydrogenase (cytochrome) (NCBI), at 928,695 to 930,143
_A0777
Rru_A0778: Rru_A0778 - Lipoprotein YaeC (NCBI), at 930,140 to 930,946
_A0778
Rru_A0779: Rru_A0779 - extracellular solute-binding protein, family 3 (NCBI), at 931,092 to 932,144
_A0779
Position (kb) 930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 929.526 kb on - strand, within Rru_A0777 at 929.849 kb on + strand, within Rru_A0777 at 930.225 kb on + strand, within Rru_A0778 at 930.408 kb on - strand, within Rru_A0778 at 930.408 kb on - strand, within Rru_A0778 at 930.437 kb on + strand, within Rru_A0778 at 930.437 kb on + strand, within Rru_A0778 at 930.438 kb on - strand, within Rru_A0778 at 930.438 kb on - strand, within Rru_A0778 at 930.485 kb on + strand, within Rru_A0778 at 930.534 kb on + strand, within Rru_A0778 at 930.535 kb on - strand, within Rru_A0778 at 930.535 kb on - strand, within Rru_A0778 at 930.743 kb on + strand, within Rru_A0778 at 930.744 kb on - strand, within Rru_A0778 at 930.744 kb on - strand, within Rru_A0778 at 930.809 kb on + strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.928 kb on + strand at 930.928 kb on + strand at 930.928 kb on + strand at 930.929 kb on - strand at 931.006 kb on + strand at 931.034 kb on + strand at 931.419 kb on - strand, within Rru_A0779 at 931.625 kb on + strand, within Rru_A0779 at 931.626 kb on - strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.928 kb on + strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 929,526 - Rru_A0777 0.57 -0.2 929,849 + Rru_A0777 0.80 -0.6 930,225 + Rru_A0778 0.11 -3.4 930,408 - Rru_A0778 0.33 +2.1 930,408 - Rru_A0778 0.33 +0.3 930,437 + Rru_A0778 0.37 +0.7 930,437 + Rru_A0778 0.37 -0.7 930,438 - Rru_A0778 0.37 -0.4 930,438 - Rru_A0778 0.37 -0.1 930,485 + Rru_A0778 0.43 +1.0 930,534 + Rru_A0778 0.49 -0.8 930,535 - Rru_A0778 0.49 +0.3 930,535 - Rru_A0778 0.49 +0.4 930,743 + Rru_A0778 0.75 -0.1 930,744 - Rru_A0778 0.75 +0.8 930,744 - Rru_A0778 0.75 +0.4 930,809 + Rru_A0778 0.83 -0.3 930,810 - Rru_A0778 0.83 +0.1 930,810 - Rru_A0778 0.83 +0.0 930,810 - Rru_A0778 0.83 -0.6 930,928 + -2.1 930,928 + +1.0 930,928 + -0.6 930,929 - -0.3 931,006 + -1.2 931,034 + +0.2 931,419 - Rru_A0779 0.31 +1.2 931,625 + Rru_A0779 0.51 -0.6 931,626 - Rru_A0779 0.51 -0.2 931,764 + Rru_A0779 0.64 -0.2 931,764 + Rru_A0779 0.64 -2.3 931,764 + Rru_A0779 0.64 -0.4 931,860 + Rru_A0779 0.73 -1.7 931,860 + Rru_A0779 0.73 -0.1 931,860 + Rru_A0779 0.73 -0.4 931,861 - Rru_A0779 0.73 -0.2 931,861 - Rru_A0779 0.73 +0.3 931,928 + Rru_A0779 0.79 -2.2 931,929 - Rru_A0779 0.79 +0.5 931,929 - Rru_A0779 0.79 +0.6
Or see this region's nucleotide sequence