Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0732

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0730 and Rru_A0731 are separated by 166 nucleotidesRru_A0731 and Rru_A0732 are separated by 87 nucleotidesRru_A0732 and Rru_A0733 overlap by 4 nucleotidesRru_A0733 and Rru_A0734 are separated by 114 nucleotides Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434 _A0730 Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302 _A0731 Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121 _A0732 Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933 _A0733 Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503 _A0734 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2at 858.601 kb on - strandat 858.659 kb on + strandat 858.659 kb on + strandat 858.660 kb on - strandat 859.300 kb on + strandat 859.300 kb on + strandat 859.300 kb on + strandat 859.301 kb on - strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.334 kb on - strandat 859.373 kb on - strandat 859.392 kb on - strandat 859.392 kb on - strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.555 kb on + strand, within Rru_A0732at 859.555 kb on + strand, within Rru_A0732at 859.556 kb on - strand, within Rru_A0732at 859.556 kb on - strand, within Rru_A0732at 859.557 kb on + strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.731 kb on - strand, within Rru_A0732at 859.969 kb on + strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 860.048 kb on + strandat 860.048 kb on + strandat 860.049 kb on - strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 861.033 kb on + strandat 861.034 kb on - strandat 861.108 kb on + strand, within Rru_A0734

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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858,601 - -0.0
858,659 + -1.3
858,659 + +0.4
858,660 - -0.7
859,300 + -0.9
859,300 + -0.7
859,300 + +0.3
859,301 - +0.7
859,333 + -0.1
859,333 + -0.8
859,333 + -0.0
859,333 + -2.7
859,333 + -1.0
859,334 - -1.9
859,373 - -1.1
859,392 - -0.8
859,392 - -0.3
859,443 + +0.5
859,443 + +0.0
859,443 + +1.8
859,443 + -0.3
859,444 - -1.2
859,444 - -1.0
859,444 - -0.1
859,444 - +0.2
859,444 - +1.3
859,444 - +0.7
859,555 + Rru_A0732 0.23 +0.6
859,555 + Rru_A0732 0.23 -0.8
859,556 - Rru_A0732 0.23 +0.8
859,556 - Rru_A0732 0.23 -0.4
859,557 + Rru_A0732 0.23 -0.1
859,558 - Rru_A0732 0.23 -0.3
859,558 - Rru_A0732 0.23 -0.5
859,558 - Rru_A0732 0.23 -2.2
859,731 - Rru_A0732 0.47 -0.2
859,969 + Rru_A0732 0.79 -1.2
859,970 - Rru_A0732 0.79 +0.7
859,970 - Rru_A0732 0.79 -0.4
859,970 - Rru_A0732 0.79 +0.3
859,970 - Rru_A0732 0.79 +1.2
860,048 + +2.0
860,048 + -0.2
860,049 - -1.5
860,975 + -0.1
860,975 + -0.2
860,975 + +0.6
860,975 + +0.6
860,975 + -0.1
860,975 + -0.0
860,975 + +0.2
860,975 + +1.7
860,975 + -0.2
860,977 + -1.4
860,977 + +0.1
860,977 + -1.5
860,977 + -0.5
860,977 + -2.4
860,977 + -0.6
860,978 - -0.7
860,978 - -1.7
860,978 - -1.3
860,978 - -0.7
860,978 - -0.7
860,978 - -1.6
861,033 + +0.5
861,034 - -0.5
861,108 + Rru_A0734 0.13 +0.6

Or see this region's nucleotide sequence