Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0689

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0688 and Rru_A0689 are separated by 59 nucleotidesRru_A0689 and Rru_A0690 are separated by 93 nucleotides Rru_A0688: Rru_A0688 - Glutamyl-tRNA synthetase (NCBI), at 812,746 to 814,080 _A0688 Rru_A0689: Rru_A0689 - Cysteine--tRNA ligase (NCBI), at 814,140 to 815,519 _A0689 Rru_A0690: Rru_A0690 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 815,613 to 819,173 _A0690 Position (kb) 814 815 816Strain fitness (log2 ratio) -1 0 1 2at 815.517 kb on + strandat 815.518 kb on - strandat 816.153 kb on + strand, within Rru_A0690at 816.154 kb on - strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.509 kb on + strand, within Rru_A0690

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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815,517 + +0.7
815,518 - +0.2
816,153 + Rru_A0690 0.15 -0.7
816,154 - Rru_A0690 0.15 +0.4
816,171 + Rru_A0690 0.16 +0.2
816,171 + Rru_A0690 0.16 +0.4
816,171 + Rru_A0690 0.16 -0.2
816,243 + Rru_A0690 0.18 +2.4
816,243 + Rru_A0690 0.18 +0.1
816,243 + Rru_A0690 0.18 -0.3
816,243 + Rru_A0690 0.18 -0.8
816,244 - Rru_A0690 0.18 +0.2
816,244 - Rru_A0690 0.18 -0.0
816,244 - Rru_A0690 0.18 +0.2
816,244 - Rru_A0690 0.18 +0.4
816,509 + Rru_A0690 0.25 -0.4

Or see this region's nucleotide sequence