Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0656

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0654 and Rru_A0655 are separated by 135 nucleotidesRru_A0655 and Rru_A0656 are separated by 33 nucleotidesRru_A0656 and Rru_A0657 are separated by 10 nucleotidesRru_A0657 and Rru_A0658 are separated by 101 nucleotides Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002 _A0654 Rru_A0655: Rru_A0655 - Transcriptional Regulator, AsnC family (NCBI), at 775,138 to 775,728 _A0655 Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472 _A0656 Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094 _A0657 Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128 _A0658 Position (kb) 775 776 777 778 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.845 kb on + strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 775.048 kb on + strandat 775.048 kb on + strandat 775.190 kb on + strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.195 kb on - strandat 775.286 kb on + strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.637 kb on + strand, within Rru_A0655at 775.639 kb on + strand, within Rru_A0655at 776.011 kb on + strandat 776.011 kb on + strandat 776.012 kb on - strandat 776.178 kb on + strand, within Rru_A0656at 776.178 kb on + strand, within Rru_A0656at 776.339 kb on - strand, within Rru_A0656at 776.339 kb on - strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.345 kb on - strand, within Rru_A0656at 776.410 kb on + strand, within Rru_A0656at 776.411 kb on - strand, within Rru_A0656at 776.700 kb on + strand, within Rru_A0656at 776.717 kb on - strand, within Rru_A0656at 776.809 kb on + strand, within Rru_A0656at 776.809 kb on + strand, within Rru_A0656at 776.809 kb on + strand, within Rru_A0656at 776.826 kb on + strand, within Rru_A0656at 776.826 kb on + strand, within Rru_A0656at 776.827 kb on - strand, within Rru_A0656at 776.827 kb on - strand, within Rru_A0656at 776.896 kb on + strand, within Rru_A0656at 776.896 kb on + strand, within Rru_A0656at 776.896 kb on + strand, within Rru_A0656at 776.896 kb on + strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.897 kb on - strand, within Rru_A0656at 776.898 kb on + strand, within Rru_A0656at 776.899 kb on - strand, within Rru_A0656at 776.937 kb on + strand, within Rru_A0656at 776.937 kb on + strand, within Rru_A0656at 776.937 kb on + strand, within Rru_A0656at 776.937 kb on + strand, within Rru_A0656at 776.937 kb on + strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.938 kb on - strand, within Rru_A0656at 776.941 kb on + strand, within Rru_A0656at 776.942 kb on - strand, within Rru_A0656at 777.094 kb on + strand, within Rru_A0656at 777.094 kb on + strand, within Rru_A0656at 777.094 kb on + strand, within Rru_A0656at 777.094 kb on + strand, within Rru_A0656at 777.095 kb on - strand, within Rru_A0656at 777.095 kb on - strand, within Rru_A0656at 777.095 kb on - strand, within Rru_A0656at 777.130 kb on + strand, within Rru_A0656at 777.131 kb on - strand, within Rru_A0656at 777.165 kb on + strand, within Rru_A0656at 777.334 kb on - strand, within Rru_A0656at 777.334 kb on - strand, within Rru_A0656at 777.607 kb on + strand, within Rru_A0656at 777.607 kb on + strand, within Rru_A0656at 777.713 kb on - strand, within Rru_A0656at 777.715 kb on + strand, within Rru_A0656at 777.715 kb on + strand, within Rru_A0656at 777.715 kb on + strand, within Rru_A0656at 777.757 kb on - strand, within Rru_A0656at 777.757 kb on - strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.647 kb on + strand, within Rru_A0656at 778.648 kb on - strand, within Rru_A0656at 778.648 kb on - strand, within Rru_A0656at 778.648 kb on - strand, within Rru_A0656at 778.648 kb on - strand, within Rru_A0656at 778.648 kb on - strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.651 kb on + strand, within Rru_A0656at 778.652 kb on - strand, within Rru_A0656at 778.652 kb on - strand, within Rru_A0656at 778.652 kb on - strand, within Rru_A0656at 778.652 kb on - strand, within Rru_A0656at 778.652 kb on - strand, within Rru_A0656at 778.973 kb on + strand, within Rru_A0656at 778.974 kb on - strand, within Rru_A0656at 778.974 kb on - strand, within Rru_A0656at 779.392 kb on + strandat 779.392 kb on + strandat 779.713 kb on - strand, within Rru_A0657at 779.713 kb on - strand, within Rru_A0657at 779.713 kb on - strand, within Rru_A0657at 780.122 kb on - strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.136 kb on - strandat 780.136 kb on - strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.162 kb on + strandat 780.182 kb on + strandat 780.191 kb on + strandat 780.360 kb on + strand, within Rru_A0658at 780.361 kb on - strand, within Rru_A0658at 780.396 kb on + strand, within Rru_A0658at 780.397 kb on - strand, within Rru_A0658

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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774,845 + Rru_A0654 0.76 -0.5
774,846 - Rru_A0654 0.76 -0.9
774,846 - Rru_A0654 0.76 -2.0
774,846 - Rru_A0654 0.76 +0.1
775,048 + -0.2
775,048 + -3.2
775,190 + +1.2
775,191 - +0.0
775,191 - -0.1
775,191 - -1.1
775,191 - +0.8
775,191 - +1.5
775,195 - -0.5
775,286 + Rru_A0655 0.25 -1.8
775,287 - Rru_A0655 0.25 -0.2
775,287 - Rru_A0655 0.25 +0.3
775,287 - Rru_A0655 0.25 +0.3
775,637 + Rru_A0655 0.84 -0.0
775,639 + Rru_A0655 0.85 +0.2
776,011 + -0.1
776,011 + -1.6
776,012 - -0.7
776,178 + Rru_A0656 0.11 +1.2
776,178 + Rru_A0656 0.11 +0.4
776,339 - Rru_A0656 0.16 +0.2
776,339 - Rru_A0656 0.16 +0.2
776,340 + Rru_A0656 0.16 -0.3
776,340 + Rru_A0656 0.16 -0.7
776,340 + Rru_A0656 0.16 -1.8
776,340 + Rru_A0656 0.16 -2.3
776,341 - Rru_A0656 0.16 +1.2
776,341 - Rru_A0656 0.16 +2.5
776,341 - Rru_A0656 0.16 -0.6
776,341 - Rru_A0656 0.16 -2.4
776,344 + Rru_A0656 0.16 -0.0
776,344 + Rru_A0656 0.16 +1.6
776,344 + Rru_A0656 0.16 +0.3
776,345 - Rru_A0656 0.16 +2.4
776,410 + Rru_A0656 0.17 -0.7
776,411 - Rru_A0656 0.17 -0.2
776,700 + Rru_A0656 0.25 +0.1
776,717 - Rru_A0656 0.26 +0.8
776,809 + Rru_A0656 0.28 +0.9
776,809 + Rru_A0656 0.28 +0.3
776,809 + Rru_A0656 0.28 +0.6
776,826 + Rru_A0656 0.29 +0.7
776,826 + Rru_A0656 0.29 -0.9
776,827 - Rru_A0656 0.29 -1.0
776,827 - Rru_A0656 0.29 +0.9
776,896 + Rru_A0656 0.31 +0.1
776,896 + Rru_A0656 0.31 -0.8
776,896 + Rru_A0656 0.31 -0.6
776,896 + Rru_A0656 0.31 +0.4
776,897 - Rru_A0656 0.31 -0.2
776,897 - Rru_A0656 0.31 -0.9
776,897 - Rru_A0656 0.31 -0.6
776,897 - Rru_A0656 0.31 +0.3
776,897 - Rru_A0656 0.31 -1.7
776,897 - Rru_A0656 0.31 +0.8
776,897 - Rru_A0656 0.31 +0.4
776,898 + Rru_A0656 0.31 +1.4
776,899 - Rru_A0656 0.31 -0.8
776,937 + Rru_A0656 0.32 +1.3
776,937 + Rru_A0656 0.32 +0.4
776,937 + Rru_A0656 0.32 +0.7
776,937 + Rru_A0656 0.32 +0.1
776,937 + Rru_A0656 0.32 +1.0
776,938 - Rru_A0656 0.32 -0.1
776,938 - Rru_A0656 0.32 -2.7
776,938 - Rru_A0656 0.32 +0.1
776,938 - Rru_A0656 0.32 +0.0
776,938 - Rru_A0656 0.32 -1.4
776,938 - Rru_A0656 0.32 +1.4
776,938 - Rru_A0656 0.32 -0.7
776,938 - Rru_A0656 0.32 -0.1
776,938 - Rru_A0656 0.32 -0.3
776,938 - Rru_A0656 0.32 +0.1
776,941 + Rru_A0656 0.32 +0.1
776,942 - Rru_A0656 0.32 +0.0
777,094 + Rru_A0656 0.36 -0.2
777,094 + Rru_A0656 0.36 -0.0
777,094 + Rru_A0656 0.36 -3.0
777,094 + Rru_A0656 0.36 +1.0
777,095 - Rru_A0656 0.36 -0.3
777,095 - Rru_A0656 0.36 -0.1
777,095 - Rru_A0656 0.36 -0.7
777,130 + Rru_A0656 0.37 +0.5
777,131 - Rru_A0656 0.37 +0.0
777,165 + Rru_A0656 0.38 -1.2
777,334 - Rru_A0656 0.42 +0.2
777,334 - Rru_A0656 0.42 +0.2
777,607 + Rru_A0656 0.50 +0.4
777,607 + Rru_A0656 0.50 +1.3
777,713 - Rru_A0656 0.53 +0.1
777,715 + Rru_A0656 0.53 -0.6
777,715 + Rru_A0656 0.53 -0.3
777,715 + Rru_A0656 0.53 -1.8
777,757 - Rru_A0656 0.54 -0.1
777,757 - Rru_A0656 0.54 +0.1
778,647 + Rru_A0656 0.78 +0.5
778,647 + Rru_A0656 0.78 -2.4
778,647 + Rru_A0656 0.78 +0.2
778,647 + Rru_A0656 0.78 -0.8
778,647 + Rru_A0656 0.78 -1.5
778,647 + Rru_A0656 0.78 +0.4
778,648 - Rru_A0656 0.78 +0.7
778,648 - Rru_A0656 0.78 -0.4
778,648 - Rru_A0656 0.78 +0.4
778,648 - Rru_A0656 0.78 -1.3
778,648 - Rru_A0656 0.78 +0.0
778,651 + Rru_A0656 0.78 +0.1
778,651 + Rru_A0656 0.78 -0.8
778,651 + Rru_A0656 0.78 -1.7
778,651 + Rru_A0656 0.78 +1.0
778,651 + Rru_A0656 0.78 +0.1
778,651 + Rru_A0656 0.78 -0.3
778,651 + Rru_A0656 0.78 +0.8
778,651 + Rru_A0656 0.78 +0.1
778,651 + Rru_A0656 0.78 +0.5
778,652 - Rru_A0656 0.78 -0.2
778,652 - Rru_A0656 0.78 +0.3
778,652 - Rru_A0656 0.78 +0.4
778,652 - Rru_A0656 0.78 +0.0
778,652 - Rru_A0656 0.78 -1.7
778,973 + Rru_A0656 0.87 +1.3
778,974 - Rru_A0656 0.87 +0.3
778,974 - Rru_A0656 0.87 +0.6
779,392 + -2.7
779,392 + -0.1
779,713 - Rru_A0657 0.38 +0.3
779,713 - Rru_A0657 0.38 -0.2
779,713 - Rru_A0657 0.38 +0.2
780,122 - +1.0
780,135 + -0.2
780,135 + -1.9
780,135 + +1.9
780,135 + -0.8
780,135 + -0.1
780,135 + -0.6
780,136 - +0.4
780,136 - +0.4
780,158 + -0.1
780,158 + +1.1
780,158 + -0.5
780,162 + -1.4
780,182 + +0.6
780,191 + +0.2
780,360 + Rru_A0658 0.18 -0.3
780,361 - Rru_A0658 0.18 -0.6
780,396 + Rru_A0658 0.21 +1.3
780,397 - Rru_A0658 0.22 +0.3

Or see this region's nucleotide sequence