Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0587 and Rru_A0588 are separated by 256 nucleotides Rru_A0588 and Rru_A0589 overlap by 4 nucleotides Rru_A0589 and Rru_A0590 overlap by 1 nucleotides
Rru_A0587: Rru_A0587 - Chaperonin Cpn60/TCP-1 (NCBI), at 696,742 to 698,388
_A0587
Rru_A0588: Rru_A0588 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 698,645 to 699,661
_A0588
Rru_A0589: Rru_A0589 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 699,658 to 700,650
_A0589
Rru_A0590: Rru_A0590 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 700,650 to 701,558
_A0590
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 698.386 kb on + strand at 698.387 kb on - strand at 698.523 kb on + strand at 698.571 kb on - strand at 698.646 kb on + strand at 698.889 kb on + strand, within Rru_A0588 at 698.890 kb on - strand, within Rru_A0588 at 698.890 kb on - strand, within Rru_A0588 at 698.910 kb on + strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.953 kb on - strand, within Rru_A0588 at 698.977 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.994 kb on - strand, within Rru_A0588 at 699.689 kb on + strand at 699.689 kb on + strand at 699.689 kb on + strand at 699.690 kb on - strand at 699.690 kb on - strand at 699.893 kb on + strand, within Rru_A0589 at 699.893 kb on + strand, within Rru_A0589 at 699.894 kb on - strand, within Rru_A0589 at 699.894 kb on - strand, within Rru_A0589 at 699.894 kb on - strand, within Rru_A0589 at 699.912 kb on - strand, within Rru_A0589 at 699.912 kb on - strand, within Rru_A0589 at 699.912 kb on - strand, within Rru_A0589 at 699.912 kb on - strand, within Rru_A0589 at 699.956 kb on + strand, within Rru_A0589 at 699.956 kb on + strand, within Rru_A0589 at 699.956 kb on + strand, within Rru_A0589 at 699.957 kb on - strand, within Rru_A0589 at 699.957 kb on - strand, within Rru_A0589 at 699.957 kb on - strand, within Rru_A0589 at 699.957 kb on - strand, within Rru_A0589 at 699.958 kb on + strand, within Rru_A0589 at 699.958 kb on + strand, within Rru_A0589 at 699.958 kb on + strand, within Rru_A0589 at 699.958 kb on + strand, within Rru_A0589 at 699.958 kb on + strand, within Rru_A0589 at 699.959 kb on - strand, within Rru_A0589 at 699.959 kb on - strand, within Rru_A0589 at 700.191 kb on - strand, within Rru_A0589 at 700.411 kb on + strand, within Rru_A0589 at 700.411 kb on + strand, within Rru_A0589 at 700.412 kb on - strand, within Rru_A0589
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 698,386 + -0.9 698,387 - +0.3 698,523 + -0.6 698,571 - -1.2 698,646 + -0.0 698,889 + Rru_A0588 0.24 +0.2 698,890 - Rru_A0588 0.24 -0.2 698,890 - Rru_A0588 0.24 -0.7 698,910 + Rru_A0588 0.26 -1.6 698,911 - Rru_A0588 0.26 -0.4 698,911 - Rru_A0588 0.26 +0.1 698,911 - Rru_A0588 0.26 -0.0 698,911 - Rru_A0588 0.26 +0.8 698,911 - Rru_A0588 0.26 -1.9 698,952 + Rru_A0588 0.30 -0.2 698,952 + Rru_A0588 0.30 +0.1 698,952 + Rru_A0588 0.30 -2.2 698,952 + Rru_A0588 0.30 +0.3 698,952 + Rru_A0588 0.30 -0.4 698,953 - Rru_A0588 0.30 -0.9 698,977 + Rru_A0588 0.33 -2.3 698,993 + Rru_A0588 0.34 +0.7 698,993 + Rru_A0588 0.34 -3.0 698,993 + Rru_A0588 0.34 +1.6 698,994 - Rru_A0588 0.34 +0.8 699,689 + +2.0 699,689 + -0.2 699,689 + +0.1 699,690 - +0.4 699,690 - -0.1 699,893 + Rru_A0589 0.24 -0.5 699,893 + Rru_A0589 0.24 +0.6 699,894 - Rru_A0589 0.24 -1.4 699,894 - Rru_A0589 0.24 +0.3 699,894 - Rru_A0589 0.24 -0.1 699,912 - Rru_A0589 0.26 +1.2 699,912 - Rru_A0589 0.26 -0.5 699,912 - Rru_A0589 0.26 +0.4 699,912 - Rru_A0589 0.26 +1.6 699,956 + Rru_A0589 0.30 -0.8 699,956 + Rru_A0589 0.30 -1.5 699,956 + Rru_A0589 0.30 -1.5 699,957 - Rru_A0589 0.30 -0.4 699,957 - Rru_A0589 0.30 +0.5 699,957 - Rru_A0589 0.30 +0.8 699,957 - Rru_A0589 0.30 +0.4 699,958 + Rru_A0589 0.30 +0.1 699,958 + Rru_A0589 0.30 +1.1 699,958 + Rru_A0589 0.30 -1.8 699,958 + Rru_A0589 0.30 +0.8 699,958 + Rru_A0589 0.30 +0.0 699,959 - Rru_A0589 0.30 +0.3 699,959 - Rru_A0589 0.30 -1.5 700,191 - Rru_A0589 0.54 +0.3 700,411 + Rru_A0589 0.76 -1.0 700,411 + Rru_A0589 0.76 -0.4 700,412 - Rru_A0589 0.76 +0.1
Or see this region's nucleotide sequence