Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0585 and Rru_A0586 are separated by 120 nucleotides Rru_A0586 and Rru_A0587 are separated by 79 nucleotides Rru_A0587 and Rru_A0588 are separated by 256 nucleotides
Rru_A0585: Rru_A0585 - ABC transporter component (NCBI), at 695,475 to 696,254
_A0585
Rru_A0586: Rru_A0586 - Chaperonin Cpn10 (NCBI), at 696,375 to 696,662
_A0586
Rru_A0587: Rru_A0587 - Chaperonin Cpn60/TCP-1 (NCBI), at 696,742 to 698,388
_A0587
Rru_A0588: Rru_A0588 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 698,645 to 699,661
_A0588
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 695.914 kb on - strand, within Rru_A0585 at 696.198 kb on + strand at 696.199 kb on - strand at 696.199 kb on - strand at 696.222 kb on - strand at 696.278 kb on + strand at 698.386 kb on + strand at 698.387 kb on - strand at 698.523 kb on + strand at 698.571 kb on - strand at 698.646 kb on + strand at 698.889 kb on + strand, within Rru_A0588 at 698.890 kb on - strand, within Rru_A0588 at 698.890 kb on - strand, within Rru_A0588 at 698.910 kb on + strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.911 kb on - strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.952 kb on + strand, within Rru_A0588 at 698.953 kb on - strand, within Rru_A0588 at 698.977 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.993 kb on + strand, within Rru_A0588 at 698.994 kb on - strand, within Rru_A0588
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 695,914 - Rru_A0585 0.56 -0.5 696,198 + -1.2 696,199 - +0.5 696,199 - +0.2 696,222 - -1.0 696,278 + +0.1 698,386 + -0.9 698,387 - +0.3 698,523 + -0.6 698,571 - -1.2 698,646 + -0.0 698,889 + Rru_A0588 0.24 +0.2 698,890 - Rru_A0588 0.24 -0.2 698,890 - Rru_A0588 0.24 -0.7 698,910 + Rru_A0588 0.26 -1.6 698,911 - Rru_A0588 0.26 -0.4 698,911 - Rru_A0588 0.26 +0.1 698,911 - Rru_A0588 0.26 -0.0 698,911 - Rru_A0588 0.26 +0.8 698,911 - Rru_A0588 0.26 -1.9 698,952 + Rru_A0588 0.30 -0.2 698,952 + Rru_A0588 0.30 +0.1 698,952 + Rru_A0588 0.30 -2.2 698,952 + Rru_A0588 0.30 +0.3 698,952 + Rru_A0588 0.30 -0.4 698,953 - Rru_A0588 0.30 -0.9 698,977 + Rru_A0588 0.33 -2.3 698,993 + Rru_A0588 0.34 +0.7 698,993 + Rru_A0588 0.34 -3.0 698,993 + Rru_A0588 0.34 +1.6 698,994 - Rru_A0588 0.34 +0.8
Or see this region's nucleotide sequence