Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0504

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0503 and Rru_A0504 are separated by 294 nucleotidesRru_A0504 and Rru_A0505 are separated by 165 nucleotides Rru_A0503: Rru_A0503 - Lysine--tRNA ligase (NCBI), at 591,916 to 593,568 _A0503 Rru_A0504: Rru_A0504 - Peptidase M23B (NCBI), at 593,863 to 595,122 _A0504 Rru_A0505: Rru_A0505 - Glycogen debranching enzyme GlgX (NCBI), at 595,288 to 597,432 _A0505 Position (kb) 593 594 595 596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 593.584 kb on + strandat 593.584 kb on + strandat 593.585 kb on - strandat 593.588 kb on + strandat 593.589 kb on - strandat 593.790 kb on + strandat 593.791 kb on - strandat 594.549 kb on + strand, within Rru_A0504at 594.685 kb on + strand, within Rru_A0504at 594.685 kb on + strand, within Rru_A0504at 594.686 kb on - strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.697 kb on - strand, within Rru_A0504at 594.865 kb on + strand, within Rru_A0504at 594.877 kb on + strand, within Rru_A0504at 594.877 kb on + strand, within Rru_A0504at 594.903 kb on + strand, within Rru_A0504at 594.903 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.926 kb on - strand, within Rru_A0504at 594.943 kb on + strand, within Rru_A0504at 594.944 kb on - strand, within Rru_A0504at 594.944 kb on - strand, within Rru_A0504at 594.997 kb on + strandat 594.998 kb on - strandat 594.998 kb on - strandat 595.036 kb on + strandat 595.036 kb on + strandat 595.037 kb on - strandat 595.037 kb on - strandat 595.037 kb on - strandat 595.039 kb on + strandat 595.040 kb on - strandat 595.462 kb on + strandat 595.463 kb on - strandat 595.463 kb on - strandat 595.464 kb on + strandat 595.464 kb on + strandat 595.465 kb on - strandat 595.465 kb on - strandat 595.486 kb on + strandat 595.487 kb on - strandat 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.531 kb on + strand, within Rru_A0505at 595.532 kb on - strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.541 kb on - strand, within Rru_A0505at 595.575 kb on + strand, within Rru_A0505at 595.575 kb on + strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.646 kb on - strand, within Rru_A0505at 595.646 kb on - strand, within Rru_A0505at 595.705 kb on - strand, within Rru_A0505at 595.705 kb on - strand, within Rru_A0505at 595.738 kb on - strand, within Rru_A0505at 595.738 kb on - strand, within Rru_A0505at 595.786 kb on + strand, within Rru_A0505at 595.787 kb on - strand, within Rru_A0505at 595.919 kb on + strand, within Rru_A0505at 595.919 kb on + strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.936 kb on + strand, within Rru_A0505at 595.936 kb on + strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.987 kb on + strand, within Rru_A0505at 595.989 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.114 kb on - strand, within Rru_A0505

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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593,584 + +0.3
593,584 + -1.3
593,585 - -4.0
593,588 + -1.5
593,589 - -0.8
593,790 + -0.9
593,791 - -2.2
594,549 + Rru_A0504 0.54 -0.3
594,685 + Rru_A0504 0.65 +1.6
594,685 + Rru_A0504 0.65 -1.5
594,686 - Rru_A0504 0.65 -0.0
594,696 + Rru_A0504 0.66 -0.0
594,696 + Rru_A0504 0.66 +1.0
594,696 + Rru_A0504 0.66 +0.6
594,696 + Rru_A0504 0.66 -1.1
594,696 + Rru_A0504 0.66 -0.7
594,697 - Rru_A0504 0.66 -1.2
594,865 + Rru_A0504 0.80 -1.8
594,877 + Rru_A0504 0.80 -0.6
594,877 + Rru_A0504 0.80 -1.8
594,903 + Rru_A0504 0.83 -0.3
594,903 + Rru_A0504 0.83 -0.4
594,925 + Rru_A0504 0.84 +0.6
594,925 + Rru_A0504 0.84 -0.5
594,925 + Rru_A0504 0.84 -1.1
594,925 + Rru_A0504 0.84 +1.0
594,925 + Rru_A0504 0.84 -0.0
594,925 + Rru_A0504 0.84 -2.8
594,926 - Rru_A0504 0.84 -0.0
594,943 + Rru_A0504 0.86 -2.4
594,944 - Rru_A0504 0.86 -2.7
594,944 - Rru_A0504 0.86 +0.5
594,997 + +1.3
594,998 - -1.1
594,998 - +0.9
595,036 + -0.1
595,036 + -0.3
595,037 - -1.8
595,037 - +0.4
595,037 - +0.4
595,039 + -0.2
595,040 - +1.4
595,462 + -1.4
595,463 - -3.3
595,463 - -0.5
595,464 + -1.2
595,464 + -2.2
595,465 - -0.1
595,465 - +1.8
595,486 + -0.9
595,487 - +0.1
595,516 + Rru_A0505 0.11 +0.1
595,516 + Rru_A0505 0.11 -0.3
595,516 + Rru_A0505 0.11 +0.1
595,516 + Rru_A0505 0.11 -1.7
595,516 + Rru_A0505 0.11 +1.0
595,516 + Rru_A0505 0.11 -0.3
595,517 - Rru_A0505 0.11 +0.0
595,517 - Rru_A0505 0.11 +0.1
595,517 - Rru_A0505 0.11 -0.9
595,517 - Rru_A0505 0.11 -0.1
595,517 - Rru_A0505 0.11 -0.7
595,517 - Rru_A0505 0.11 -3.3
595,531 + Rru_A0505 0.11 -1.2
595,532 - Rru_A0505 0.11 -0.1
595,540 + Rru_A0505 0.12 -0.4
595,540 + Rru_A0505 0.12 -0.1
595,540 + Rru_A0505 0.12 -0.0
595,541 - Rru_A0505 0.12 +1.3
595,575 + Rru_A0505 0.13 -2.8
595,575 + Rru_A0505 0.13 +0.1
595,576 - Rru_A0505 0.13 +0.2
595,576 - Rru_A0505 0.13 -2.7
595,576 - Rru_A0505 0.13 -1.2
595,576 - Rru_A0505 0.13 -0.1
595,646 - Rru_A0505 0.17 -1.7
595,646 - Rru_A0505 0.17 +0.1
595,705 - Rru_A0505 0.19 +1.9
595,705 - Rru_A0505 0.19 +0.5
595,738 - Rru_A0505 0.21 +0.2
595,738 - Rru_A0505 0.21 -2.6
595,786 + Rru_A0505 0.23 -1.5
595,787 - Rru_A0505 0.23 -1.3
595,919 + Rru_A0505 0.29 -0.8
595,919 + Rru_A0505 0.29 -0.3
595,920 - Rru_A0505 0.29 -0.4
595,920 - Rru_A0505 0.29 -2.7
595,920 - Rru_A0505 0.29 -0.9
595,920 - Rru_A0505 0.29 -0.4
595,936 + Rru_A0505 0.30 -0.4
595,936 + Rru_A0505 0.30 -0.3
595,937 - Rru_A0505 0.30 +0.9
595,937 - Rru_A0505 0.30 -0.7
595,937 - Rru_A0505 0.30 +1.0
595,937 - Rru_A0505 0.30 -1.2
595,937 - Rru_A0505 0.30 -0.7
595,937 - Rru_A0505 0.30 -3.0
595,979 - Rru_A0505 0.32 -0.1
595,979 - Rru_A0505 0.32 -0.4
595,979 - Rru_A0505 0.32 -1.1
595,979 - Rru_A0505 0.32 -0.1
595,987 + Rru_A0505 0.33 +0.5
595,989 + Rru_A0505 0.33 -2.5
596,023 + Rru_A0505 0.34 -0.1
596,023 + Rru_A0505 0.34 -0.3
596,023 + Rru_A0505 0.34 -0.1
596,023 + Rru_A0505 0.34 -1.4
596,023 + Rru_A0505 0.34 -0.8
596,023 + Rru_A0505 0.34 +0.3
596,024 - Rru_A0505 0.34 -1.0
596,024 - Rru_A0505 0.34 +0.4
596,024 - Rru_A0505 0.34 -1.1
596,024 - Rru_A0505 0.34 -0.3
596,024 - Rru_A0505 0.34 +0.3
596,024 - Rru_A0505 0.34 +0.2
596,024 - Rru_A0505 0.34 -3.2
596,024 - Rru_A0505 0.34 +1.0
596,024 - Rru_A0505 0.34 +0.7
596,024 - Rru_A0505 0.34 -0.6
596,024 - Rru_A0505 0.34 -0.5
596,113 + Rru_A0505 0.38 -3.7
596,113 + Rru_A0505 0.38 +0.9
596,113 + Rru_A0505 0.38 +0.4
596,113 + Rru_A0505 0.38 -1.6
596,114 - Rru_A0505 0.39 +0.4

Or see this region's nucleotide sequence