Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0400 and Rru_A0401 are separated by 126 nucleotides Rru_A0401 and Rru_A0402 are separated by 4 nucleotides Rru_A0402 and Rru_A0403 are separated by 33 nucleotides
Rru_A0400: Rru_A0400 - hypothetical protein (NCBI), at 476,995 to 478,437
_A0400
Rru_A0401: Rru_A0401 - hypothetical protein (NCBI), at 478,564 to 479,253
_A0401
Rru_A0402: Rru_A0402 - hypothetical protein (NCBI), at 479,258 to 479,857
_A0402
Rru_A0403: Rru_A0403 - Short-chain dehydrogenase/reductase SDR (NCBI), at 479,891 to 480,604
_A0403
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.000 kb on + strand, within Rru_A0400 at 478.174 kb on + strand, within Rru_A0400 at 478.175 kb on - strand, within Rru_A0400 at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.684 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 479.351 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.435 kb on + strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402 at 479.575 kb on + strand, within Rru_A0402 at 479.575 kb on + strand, within Rru_A0402 at 479.576 kb on - strand, within Rru_A0402 at 479.679 kb on + strand, within Rru_A0402 at 479.681 kb on + strand, within Rru_A0402 at 479.682 kb on - strand, within Rru_A0402 at 479.744 kb on - strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.746 kb on - strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.754 kb on - strand, within Rru_A0402 at 479.754 kb on - strand, within Rru_A0402 at 479.892 kb on + strand at 479.893 kb on - strand at 480.133 kb on - strand, within Rru_A0403 at 480.144 kb on + strand, within Rru_A0403 at 480.241 kb on - strand, within Rru_A0403
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 478,000 + Rru_A0400 0.70 -0.8 478,174 + Rru_A0400 0.82 +0.1 478,175 - Rru_A0400 0.82 +0.6 478,375 + +0.8 478,375 + -1.3 478,375 + -0.2 478,375 + -0.3 478,375 + -1.4 478,375 + -1.8 478,375 + +0.3 478,376 - +1.1 478,376 - +0.4 478,376 - +0.7 478,376 - -0.7 478,376 - +1.3 478,684 - Rru_A0401 0.17 -0.4 478,897 - Rru_A0401 0.48 -1.2 478,897 - Rru_A0401 0.48 -3.1 479,351 + Rru_A0402 0.15 +0.3 479,432 + Rru_A0402 0.29 -0.1 479,432 + Rru_A0402 0.29 +0.7 479,432 + Rru_A0402 0.29 +2.5 479,432 + Rru_A0402 0.29 -0.8 479,432 + Rru_A0402 0.29 -0.7 479,433 - Rru_A0402 0.29 -1.0 479,433 - Rru_A0402 0.29 -0.7 479,433 - Rru_A0402 0.29 +0.2 479,433 - Rru_A0402 0.29 -0.5 479,433 - Rru_A0402 0.29 -0.1 479,435 + Rru_A0402 0.29 +0.2 479,436 - Rru_A0402 0.30 +0.6 479,436 - Rru_A0402 0.30 +0.2 479,575 + Rru_A0402 0.53 -0.7 479,575 + Rru_A0402 0.53 -0.3 479,576 - Rru_A0402 0.53 -0.3 479,679 + Rru_A0402 0.70 -0.2 479,681 + Rru_A0402 0.70 +0.8 479,682 - Rru_A0402 0.71 -0.8 479,744 - Rru_A0402 0.81 -0.9 479,745 + Rru_A0402 0.81 -0.1 479,745 + Rru_A0402 0.81 -0.6 479,745 + Rru_A0402 0.81 -0.5 479,745 + Rru_A0402 0.81 -0.3 479,746 - Rru_A0402 0.81 -0.3 479,753 + Rru_A0402 0.82 -1.4 479,753 + Rru_A0402 0.82 -3.1 479,753 + Rru_A0402 0.82 -0.1 479,753 + Rru_A0402 0.82 +0.9 479,753 + Rru_A0402 0.82 +0.3 479,754 - Rru_A0402 0.83 -0.5 479,754 - Rru_A0402 0.83 +0.9 479,892 + -1.7 479,893 - -0.1 480,133 - Rru_A0403 0.34 -1.9 480,144 + Rru_A0403 0.35 -0.4 480,241 - Rru_A0403 0.49 -2.3
Or see this region's nucleotide sequence