Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0264 and Rru_A0265 are separated by 119 nucleotides Rru_A0265 and Rru_A0266 are separated by 150 nucleotides
Rru_A0264: Rru_A0264 - TPR repeat (NCBI), at 327,226 to 329,025
_A0264
Rru_A0265: Rru_A0265 - Electron-transferring-flavoproteindehydrogenase (NCBI), at 329,145 to 330,782
_A0265
Rru_A0266: Rru_A0266 - Phage SPO1 DNA polymerase-related protein (NCBI), at 330,933 to 331,880
_A0266
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 328.158 kb on - strand, within Rru_A0264 at 328.161 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.414 kb on - strand, within Rru_A0264 at 328.414 kb on - strand, within Rru_A0264 at 328.467 kb on - strand, within Rru_A0264 at 328.746 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.857 kb on - strand at 328.857 kb on - strand at 328.857 kb on - strand at 328.857 kb on - strand at 329.146 kb on + strand at 329.146 kb on + strand at 329.147 kb on - strand at 329.147 kb on - strand at 329.147 kb on - strand at 329.150 kb on + strand at 329.151 kb on - strand at 329.158 kb on + strand at 329.159 kb on - strand at 329.159 kb on - strand at 329.159 kb on - strand at 329.321 kb on - strand, within Rru_A0265 at 329.341 kb on + strand, within Rru_A0265 at 329.669 kb on + strand, within Rru_A0265 at 329.669 kb on + strand, within Rru_A0265 at 329.772 kb on - strand, within Rru_A0265 at 330.041 kb on - strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.157 kb on + strand, within Rru_A0265 at 330.157 kb on + strand, within Rru_A0265 at 330.158 kb on - strand, within Rru_A0265 at 330.455 kb on - strand, within Rru_A0265 at 330.455 kb on - strand, within Rru_A0265 at 330.866 kb on + strand at 330.867 kb on - strand at 330.871 kb on + strand at 330.871 kb on + strand at 330.871 kb on + strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.918 kb on + strand at 330.918 kb on + strand at 330.918 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 328,158 - Rru_A0264 0.52 +0.4 328,161 - Rru_A0264 0.52 -3.3 328,383 - Rru_A0264 0.64 -1.0 328,383 - Rru_A0264 0.64 -0.2 328,383 - Rru_A0264 0.64 +0.9 328,383 - Rru_A0264 0.64 -0.5 328,383 - Rru_A0264 0.64 -0.8 328,414 - Rru_A0264 0.66 -0.2 328,414 - Rru_A0264 0.66 +0.1 328,467 - Rru_A0264 0.69 +0.3 328,746 - Rru_A0264 0.84 +0.1 328,800 - Rru_A0264 0.87 -0.5 328,800 - Rru_A0264 0.87 +0.4 328,800 - Rru_A0264 0.87 -0.8 328,857 - +0.8 328,857 - -0.2 328,857 - -1.0 328,857 - -0.1 329,146 + -0.1 329,146 + -1.5 329,147 - +0.2 329,147 - -0.4 329,147 - -1.0 329,150 + -1.9 329,151 - -1.4 329,158 + -3.1 329,159 - -0.3 329,159 - -1.8 329,159 - -3.2 329,321 - Rru_A0265 0.11 -3.3 329,341 + Rru_A0265 0.12 +0.1 329,669 + Rru_A0265 0.32 -2.2 329,669 + Rru_A0265 0.32 -1.2 329,772 - Rru_A0265 0.38 -1.2 330,041 - Rru_A0265 0.55 -0.2 330,058 + Rru_A0265 0.56 +0.1 330,058 + Rru_A0265 0.56 -2.4 330,058 + Rru_A0265 0.56 -2.9 330,058 + Rru_A0265 0.56 -0.3 330,058 + Rru_A0265 0.56 +0.3 330,157 + Rru_A0265 0.62 -1.2 330,157 + Rru_A0265 0.62 -0.3 330,158 - Rru_A0265 0.62 -2.7 330,455 - Rru_A0265 0.80 -0.8 330,455 - Rru_A0265 0.80 -3.4 330,866 + -1.2 330,867 - -0.1 330,871 + -1.7 330,871 + -1.3 330,871 + -0.2 330,872 - -0.7 330,872 - -0.5 330,872 - +0.0 330,872 - -1.8 330,872 - +0.3 330,872 - -1.3 330,872 - +0.4 330,872 - +1.2 330,918 + -0.4 330,918 + -3.1 330,918 + +0.6 330,924 + -1.0 330,924 + -0.1 330,924 + -0.4 330,924 + -0.1 330,924 + +2.2
Or see this region's nucleotide sequence