Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1358

Experiment: Thallium(I) acetate 0.001953125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1357 and Synpcc7942_1358 are separated by 316 nucleotidesSynpcc7942_1358 and Synpcc7942_1359 are separated by 415 nucleotides Synpcc7942_1357: Synpcc7942_1357 - multi-sensor signal transduction histidine kinase, at 1,391,347 to 1,396,770 _1357 Synpcc7942_1358: Synpcc7942_1358 - hypothetical protein, at 1,397,087 to 1,397,878 _1358 Synpcc7942_1359: Synpcc7942_1359 - coenzyme F420 hydrogenase, at 1,398,294 to 1,399,499 _1359 Position (kb) 1397 1398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1396.177 kb on - strand, within Synpcc7942_1357at 1396.278 kb on - strandat 1396.707 kb on - strandat 1396.707 kb on - strandat 1396.719 kb on - strandat 1396.805 kb on + strandat 1396.811 kb on - strandat 1396.834 kb on - strandat 1396.959 kb on + strandat 1396.969 kb on + strandat 1397.009 kb on + strandat 1397.009 kb on + strandat 1397.009 kb on + strandat 1397.178 kb on + strand, within Synpcc7942_1358at 1397.218 kb on - strandat 1397.218 kb on - strand, within Synpcc7942_1358at 1397.226 kb on + strand, within Synpcc7942_1358at 1397.246 kb on - strand, within Synpcc7942_1358at 1397.246 kb on - strand, within Synpcc7942_1358at 1397.259 kb on + strand, within Synpcc7942_1358at 1397.277 kb on - strand, within Synpcc7942_1358at 1397.335 kb on + strand, within Synpcc7942_1358at 1397.343 kb on - strand, within Synpcc7942_1358at 1397.346 kb on + strand, within Synpcc7942_1358at 1397.354 kb on - strand, within Synpcc7942_1358at 1397.354 kb on - strand, within Synpcc7942_1358at 1397.355 kb on - strand, within Synpcc7942_1358at 1397.458 kb on + strand, within Synpcc7942_1358at 1397.505 kb on - strand, within Synpcc7942_1358at 1397.507 kb on + strand, within Synpcc7942_1358at 1397.529 kb on - strand, within Synpcc7942_1358at 1397.554 kb on + strand, within Synpcc7942_1358at 1397.564 kb on - strand, within Synpcc7942_1358at 1397.572 kb on - strand, within Synpcc7942_1358at 1397.582 kb on - strand, within Synpcc7942_1358at 1397.601 kb on + strand, within Synpcc7942_1358at 1397.601 kb on + strand, within Synpcc7942_1358at 1397.606 kb on + strand, within Synpcc7942_1358at 1397.606 kb on + strand, within Synpcc7942_1358at 1397.611 kb on + strand, within Synpcc7942_1358at 1397.614 kb on - strand, within Synpcc7942_1358at 1397.619 kb on - strand, within Synpcc7942_1358at 1397.619 kb on - strand, within Synpcc7942_1358at 1397.632 kb on - strand, within Synpcc7942_1358at 1397.662 kb on - strand, within Synpcc7942_1358at 1397.670 kb on - strand, within Synpcc7942_1358at 1397.672 kb on + strand, within Synpcc7942_1358at 1397.680 kb on - strand, within Synpcc7942_1358at 1397.695 kb on + strand, within Synpcc7942_1358at 1397.697 kb on + strand, within Synpcc7942_1358at 1397.703 kb on + strand, within Synpcc7942_1358at 1397.703 kb on - strand, within Synpcc7942_1358at 1397.705 kb on - strand, within Synpcc7942_1358at 1397.712 kb on - strand, within Synpcc7942_1358at 1397.717 kb on + strand, within Synpcc7942_1358at 1397.717 kb on + strand, within Synpcc7942_1358at 1397.718 kb on + strand, within Synpcc7942_1358at 1397.718 kb on - strand, within Synpcc7942_1358at 1397.725 kb on - strand, within Synpcc7942_1358at 1397.725 kb on - strand, within Synpcc7942_1358at 1397.725 kb on - strand, within Synpcc7942_1358at 1397.762 kb on - strand, within Synpcc7942_1358at 1397.765 kb on + strand, within Synpcc7942_1358at 1397.773 kb on - strand, within Synpcc7942_1358at 1397.823 kb on + strandat 1397.826 kb on - strandat 1397.843 kb on + strandat 1397.843 kb on + strandat 1397.855 kb on + strandat 1397.903 kb on + strandat 1397.903 kb on + strandat 1397.911 kb on + strandat 1397.911 kb on + strandat 1397.911 kb on + strandat 1397.933 kb on + strandat 1397.935 kb on + strandat 1398.002 kb on - strandat 1398.020 kb on - strandat 1398.024 kb on + strandat 1398.032 kb on - strandat 1398.059 kb on - strandat 1398.070 kb on + strandat 1398.071 kb on + strandat 1398.114 kb on - strandat 1398.114 kb on - strandat 1398.124 kb on - strandat 1398.182 kb on + strandat 1398.190 kb on - strandat 1398.190 kb on - strandat 1398.216 kb on + strandat 1398.281 kb on + strandat 1398.289 kb on - strandat 1398.289 kb on - strandat 1398.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001953125 mg/ml
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1,396,177 - Synpcc7942_1357 0.89 +0.7
1,396,278 - +0.9
1,396,707 - +3.1
1,396,707 - +0.3
1,396,719 - +3.8
1,396,805 + +2.0
1,396,811 - +2.3
1,396,834 - +0.9
1,396,959 + +1.5
1,396,969 + -0.1
1,397,009 + -1.1
1,397,009 + +0.5
1,397,009 + +0.4
1,397,178 + Synpcc7942_1358 0.11 +0.3
1,397,218 - -1.6
1,397,218 - Synpcc7942_1358 0.17 -1.1
1,397,226 + Synpcc7942_1358 0.18 +1.7
1,397,246 - Synpcc7942_1358 0.20 -0.2
1,397,246 - Synpcc7942_1358 0.20 -2.1
1,397,259 + Synpcc7942_1358 0.22 -0.4
1,397,277 - Synpcc7942_1358 0.24 -0.6
1,397,335 + Synpcc7942_1358 0.31 -0.5
1,397,343 - Synpcc7942_1358 0.32 -2.1
1,397,346 + Synpcc7942_1358 0.33 -3.6
1,397,354 - Synpcc7942_1358 0.34 -1.6
1,397,354 - Synpcc7942_1358 0.34 -1.3
1,397,355 - Synpcc7942_1358 0.34 -0.1
1,397,458 + Synpcc7942_1358 0.47 -2.1
1,397,505 - Synpcc7942_1358 0.53 -1.6
1,397,507 + Synpcc7942_1358 0.53 +0.1
1,397,529 - Synpcc7942_1358 0.56 +1.1
1,397,554 + Synpcc7942_1358 0.59 -1.1
1,397,564 - Synpcc7942_1358 0.60 -0.1
1,397,572 - Synpcc7942_1358 0.61 -0.7
1,397,582 - Synpcc7942_1358 0.62 -2.6
1,397,601 + Synpcc7942_1358 0.65 -0.1
1,397,601 + Synpcc7942_1358 0.65 +0.2
1,397,606 + Synpcc7942_1358 0.66 -1.1
1,397,606 + Synpcc7942_1358 0.66 -1.1
1,397,611 + Synpcc7942_1358 0.66 -1.6
1,397,614 - Synpcc7942_1358 0.67 -1.3
1,397,619 - Synpcc7942_1358 0.67 -0.1
1,397,619 - Synpcc7942_1358 0.67 -1.6
1,397,632 - Synpcc7942_1358 0.69 -1.1
1,397,662 - Synpcc7942_1358 0.73 -2.6
1,397,670 - Synpcc7942_1358 0.74 +0.0
1,397,672 + Synpcc7942_1358 0.74 -2.1
1,397,680 - Synpcc7942_1358 0.75 -2.3
1,397,695 + Synpcc7942_1358 0.77 -0.6
1,397,697 + Synpcc7942_1358 0.77 -0.1
1,397,703 + Synpcc7942_1358 0.78 -0.3
1,397,703 - Synpcc7942_1358 0.78 -0.7
1,397,705 - Synpcc7942_1358 0.78 -0.1
1,397,712 - Synpcc7942_1358 0.79 -0.1
1,397,717 + Synpcc7942_1358 0.80 +1.7
1,397,717 + Synpcc7942_1358 0.80 -2.1
1,397,718 + Synpcc7942_1358 0.80 -4.2
1,397,718 - Synpcc7942_1358 0.80 +0.3
1,397,725 - Synpcc7942_1358 0.81 -1.1
1,397,725 - Synpcc7942_1358 0.81 -1.1
1,397,725 - Synpcc7942_1358 0.81 -1.1
1,397,762 - Synpcc7942_1358 0.85 +0.1
1,397,765 + Synpcc7942_1358 0.86 -1.9
1,397,773 - Synpcc7942_1358 0.87 +0.4
1,397,823 + +0.9
1,397,826 - -0.3
1,397,843 + +0.4
1,397,843 + +0.5
1,397,855 + +1.3
1,397,903 + +0.5
1,397,903 + -0.2
1,397,911 + +2.3
1,397,911 + +0.9
1,397,911 + +1.6
1,397,933 + -0.4
1,397,935 + +0.8
1,398,002 - +1.4
1,398,020 - +0.5
1,398,024 + +2.1
1,398,032 - +0.3
1,398,059 - -0.1
1,398,070 + -0.1
1,398,071 + +2.5
1,398,114 - +0.7
1,398,114 - -1.1
1,398,124 - +1.0
1,398,182 + +2.7
1,398,190 - -2.6
1,398,190 - -0.4
1,398,216 + +0.5
1,398,281 + -0.3
1,398,289 - +0.6
1,398,289 - -1.5
1,398,319 - +0.6

Or see this region's nucleotide sequence