Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1095

Experiment: Thallium(I) acetate 0.001953125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1094 and Synpcc7942_1095 are separated by 317 nucleotidesSynpcc7942_1095 and thiC are separated by 75 nucleotides Synpcc7942_1094: Synpcc7942_1094 - putative transcriptional activator, TenA family, at 1,111,918 to 1,112,535 _1094 Synpcc7942_1095: Synpcc7942_1095 - hypothetical protein, at 1,112,853 to 1,113,278 _1095 Synpcc7942_1096: thiC - thiamine biosynthesis protein ThiC, at 1,113,354 to 1,114,724 thiC Position (kb) 1112 1113 1114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1111.903 kb on - strandat 1111.905 kb on + strandat 1111.913 kb on - strandat 1111.915 kb on + strandat 1111.915 kb on + strandat 1111.923 kb on - strandat 1111.923 kb on - strandat 1111.923 kb on - strandat 1111.945 kb on - strandat 1111.969 kb on + strandat 1111.969 kb on + strandat 1111.969 kb on + strandat 1111.970 kb on + strandat 1111.970 kb on + strandat 1111.970 kb on - strandat 1111.977 kb on - strandat 1111.977 kb on - strandat 1111.978 kb on - strandat 1111.978 kb on - strandat 1111.978 kb on - strandat 1111.980 kb on - strand, within Synpcc7942_1094at 1111.985 kb on - strand, within Synpcc7942_1094at 1111.990 kb on - strand, within Synpcc7942_1094at 1112.016 kb on + strand, within Synpcc7942_1094at 1112.018 kb on + strand, within Synpcc7942_1094at 1112.026 kb on - strand, within Synpcc7942_1094at 1112.026 kb on - strand, within Synpcc7942_1094at 1112.026 kb on - strand, within Synpcc7942_1094at 1112.039 kb on - strand, within Synpcc7942_1094at 1112.047 kb on + strand, within Synpcc7942_1094at 1112.047 kb on - strand, within Synpcc7942_1094at 1112.052 kb on + strand, within Synpcc7942_1094at 1112.062 kb on + strand, within Synpcc7942_1094at 1112.071 kb on - strand, within Synpcc7942_1094at 1112.071 kb on - strand, within Synpcc7942_1094at 1112.078 kb on + strand, within Synpcc7942_1094at 1112.086 kb on - strand, within Synpcc7942_1094at 1112.108 kb on + strandat 1112.108 kb on + strand, within Synpcc7942_1094at 1112.108 kb on + strand, within Synpcc7942_1094at 1112.108 kb on + strand, within Synpcc7942_1094at 1112.108 kb on + strand, within Synpcc7942_1094at 1112.111 kb on - strand, within Synpcc7942_1094at 1112.116 kb on - strand, within Synpcc7942_1094at 1112.129 kb on + strand, within Synpcc7942_1094at 1112.136 kb on + strand, within Synpcc7942_1094at 1112.137 kb on - strand, within Synpcc7942_1094at 1112.141 kb on + strand, within Synpcc7942_1094at 1112.175 kb on + strand, within Synpcc7942_1094at 1112.183 kb on + strand, within Synpcc7942_1094at 1112.183 kb on + strand, within Synpcc7942_1094at 1112.228 kb on + strand, within Synpcc7942_1094at 1112.228 kb on + strand, within Synpcc7942_1094at 1112.233 kb on + strand, within Synpcc7942_1094at 1112.238 kb on + strand, within Synpcc7942_1094at 1112.269 kb on + strand, within Synpcc7942_1094at 1112.284 kb on + strand, within Synpcc7942_1094at 1112.284 kb on + strand, within Synpcc7942_1094at 1112.286 kb on + strand, within Synpcc7942_1094at 1112.286 kb on - strand, within Synpcc7942_1094at 1112.286 kb on - strand, within Synpcc7942_1094at 1112.294 kb on - strand, within Synpcc7942_1094at 1112.305 kb on - strand, within Synpcc7942_1094at 1112.314 kb on - strand, within Synpcc7942_1094at 1112.361 kb on + strand, within Synpcc7942_1094at 1112.361 kb on + strand, within Synpcc7942_1094at 1112.361 kb on + strand, within Synpcc7942_1094at 1112.361 kb on + strand, within Synpcc7942_1094at 1112.369 kb on + strand, within Synpcc7942_1094at 1112.369 kb on + strand, within Synpcc7942_1094at 1112.369 kb on - strand, within Synpcc7942_1094at 1112.377 kb on - strand, within Synpcc7942_1094at 1112.377 kb on - strand, within Synpcc7942_1094at 1112.377 kb on - strand, within Synpcc7942_1094at 1112.377 kb on - strand, within Synpcc7942_1094at 1112.414 kb on + strand, within Synpcc7942_1094at 1112.440 kb on - strand, within Synpcc7942_1094at 1112.446 kb on + strand, within Synpcc7942_1094at 1112.455 kb on - strand, within Synpcc7942_1094at 1112.471 kb on - strand, within Synpcc7942_1094at 1112.515 kb on + strandat 1112.543 kb on - strandat 1112.565 kb on + strandat 1112.571 kb on - strandat 1112.577 kb on - strandat 1112.582 kb on - strandat 1112.587 kb on + strandat 1112.590 kb on - strandat 1112.643 kb on + strandat 1112.652 kb on + strandat 1112.652 kb on + strandat 1112.654 kb on + strandat 1112.659 kb on + strandat 1112.670 kb on + strandat 1112.676 kb on + strandat 1112.691 kb on + strandat 1112.691 kb on + strandat 1112.691 kb on + strandat 1112.699 kb on - strandat 1112.699 kb on - strandat 1112.702 kb on - strandat 1112.708 kb on - strandat 1112.715 kb on + strandat 1112.718 kb on + strandat 1112.718 kb on + strandat 1112.737 kb on + strandat 1112.737 kb on + strandat 1112.745 kb on - strandat 1112.748 kb on + strandat 1112.756 kb on - strandat 1112.756 kb on - strandat 1112.756 kb on - strandat 1112.778 kb on + strandat 1112.802 kb on + strandat 1112.829 kb on - strandat 1112.834 kb on - strandat 1112.834 kb on - strandat 1112.838 kb on + strandat 1112.850 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.860 kb on + strandat 1112.866 kb on + strandat 1112.868 kb on - strandat 1112.868 kb on - strandat 1112.884 kb on - strandat 1112.894 kb on - strandat 1112.975 kb on - strand, within Synpcc7942_1095at 1113.034 kb on + strand, within Synpcc7942_1095at 1113.094 kb on + strand, within Synpcc7942_1095at 1113.104 kb on + strand, within Synpcc7942_1095at 1113.126 kb on + strand, within Synpcc7942_1095at 1113.126 kb on - strand, within Synpcc7942_1095at 1113.127 kb on + strand, within Synpcc7942_1095at 1113.179 kb on - strand, within Synpcc7942_1095at 1113.241 kb on + strandat 1113.241 kb on + strandat 1113.249 kb on - strandat 1113.249 kb on - strandat 1113.302 kb on + strandat 1113.312 kb on - strandat 1113.334 kb on + strandat 1113.334 kb on + strandat 1113.334 kb on + strandat 1113.334 kb on + strandat 1113.334 kb on + strandat 1113.342 kb on - strandat 1113.342 kb on - strandat 1113.342 kb on - strandat 1113.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001953125 mg/ml
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1,111,903 - +0.9
1,111,905 + -0.1
1,111,913 - -2.1
1,111,915 + +0.9
1,111,915 + -0.1
1,111,923 - +0.3
1,111,923 - +2.3
1,111,923 - -1.1
1,111,945 - +0.7
1,111,969 + +0.7
1,111,969 + +1.5
1,111,969 + +0.3
1,111,970 + +2.0
1,111,970 + +1.1
1,111,970 - +0.5
1,111,977 - +0.9
1,111,977 - +0.3
1,111,978 - +1.5
1,111,978 - +0.3
1,111,978 - -2.1
1,111,980 - Synpcc7942_1094 0.10 -1.1
1,111,985 - Synpcc7942_1094 0.11 +2.9
1,111,990 - Synpcc7942_1094 0.12 +1.7
1,112,016 + Synpcc7942_1094 0.16 +0.3
1,112,018 + Synpcc7942_1094 0.16 +1.9
1,112,026 - Synpcc7942_1094 0.17 +1.1
1,112,026 - Synpcc7942_1094 0.17 -1.1
1,112,026 - Synpcc7942_1094 0.17 -0.3
1,112,039 - Synpcc7942_1094 0.20 -1.8
1,112,047 + Synpcc7942_1094 0.21 +0.5
1,112,047 - Synpcc7942_1094 0.21 -1.1
1,112,052 + Synpcc7942_1094 0.22 +0.9
1,112,062 + Synpcc7942_1094 0.23 +0.1
1,112,071 - Synpcc7942_1094 0.25 +0.7
1,112,071 - Synpcc7942_1094 0.25 -0.8
1,112,078 + Synpcc7942_1094 0.26 +1.4
1,112,086 - Synpcc7942_1094 0.27 -0.5
1,112,108 + -1.1
1,112,108 + Synpcc7942_1094 0.31 +0.8
1,112,108 + Synpcc7942_1094 0.31 +2.9
1,112,108 + Synpcc7942_1094 0.31 +0.8
1,112,108 + Synpcc7942_1094 0.31 -0.1
1,112,111 - Synpcc7942_1094 0.31 -0.0
1,112,116 - Synpcc7942_1094 0.32 +2.0
1,112,129 + Synpcc7942_1094 0.34 +3.0
1,112,136 + Synpcc7942_1094 0.35 -0.1
1,112,137 - Synpcc7942_1094 0.35 +1.4
1,112,141 + Synpcc7942_1094 0.36 +1.6
1,112,175 + Synpcc7942_1094 0.42 +2.1
1,112,183 + Synpcc7942_1094 0.43 +2.7
1,112,183 + Synpcc7942_1094 0.43 -0.5
1,112,228 + Synpcc7942_1094 0.50 -0.1
1,112,228 + Synpcc7942_1094 0.50 +0.5
1,112,233 + Synpcc7942_1094 0.51 -1.7
1,112,238 + Synpcc7942_1094 0.52 +2.3
1,112,269 + Synpcc7942_1094 0.57 +0.5
1,112,284 + Synpcc7942_1094 0.59 +2.6
1,112,284 + Synpcc7942_1094 0.59 +1.4
1,112,286 + Synpcc7942_1094 0.60 +1.5
1,112,286 - Synpcc7942_1094 0.60 +2.0
1,112,286 - Synpcc7942_1094 0.60 +1.9
1,112,294 - Synpcc7942_1094 0.61 -1.7
1,112,305 - Synpcc7942_1094 0.63 +2.0
1,112,314 - Synpcc7942_1094 0.64 +0.6
1,112,361 + Synpcc7942_1094 0.72 +0.1
1,112,361 + Synpcc7942_1094 0.72 +0.7
1,112,361 + Synpcc7942_1094 0.72 -1.1
1,112,361 + Synpcc7942_1094 0.72 +3.2
1,112,369 + Synpcc7942_1094 0.73 +0.7
1,112,369 + Synpcc7942_1094 0.73 +2.3
1,112,369 - Synpcc7942_1094 0.73 +0.9
1,112,377 - Synpcc7942_1094 0.74 +1.7
1,112,377 - Synpcc7942_1094 0.74 -0.7
1,112,377 - Synpcc7942_1094 0.74 +2.2
1,112,377 - Synpcc7942_1094 0.74 +0.2
1,112,414 + Synpcc7942_1094 0.80 -0.1
1,112,440 - Synpcc7942_1094 0.84 -0.1
1,112,446 + Synpcc7942_1094 0.85 -1.7
1,112,455 - Synpcc7942_1094 0.87 +1.3
1,112,471 - Synpcc7942_1094 0.89 +1.4
1,112,515 + +1.7
1,112,543 - +1.6
1,112,565 + +0.1
1,112,571 - +0.5
1,112,577 - -2.1
1,112,582 - +0.5
1,112,587 + +0.7
1,112,590 - -1.1
1,112,643 + +0.9
1,112,652 + +2.1
1,112,652 + +0.9
1,112,654 + +0.5
1,112,659 + +1.5
1,112,670 + +0.9
1,112,676 + -1.1
1,112,691 + +0.9
1,112,691 + +1.8
1,112,691 + +0.5
1,112,699 - +2.2
1,112,699 - +0.8
1,112,702 - -2.7
1,112,708 - -0.2
1,112,715 + -0.1
1,112,718 + -0.5
1,112,718 + +0.5
1,112,737 + +1.5
1,112,737 + -0.4
1,112,745 - -3.1
1,112,748 + +2.2
1,112,756 - +0.9
1,112,756 - +0.7
1,112,756 - +1.4
1,112,778 + +0.9
1,112,802 + -1.1
1,112,829 - +1.0
1,112,834 - +3.0
1,112,834 - +2.0
1,112,838 + +0.1
1,112,850 + +0.7
1,112,860 + +2.6
1,112,860 + +1.5
1,112,860 + -1.1
1,112,860 + -1.1
1,112,860 + -0.1
1,112,860 + +1.5
1,112,860 + +2.8
1,112,866 + -1.1
1,112,868 - -0.1
1,112,868 - -0.3
1,112,884 - +0.6
1,112,894 - -2.7
1,112,975 - Synpcc7942_1095 0.29 +1.5
1,113,034 + Synpcc7942_1095 0.42 -0.1
1,113,094 + Synpcc7942_1095 0.57 +1.0
1,113,104 + Synpcc7942_1095 0.59 -1.3
1,113,126 + Synpcc7942_1095 0.64 -2.7
1,113,126 - Synpcc7942_1095 0.64 -1.8
1,113,127 + Synpcc7942_1095 0.64 -0.6
1,113,179 - Synpcc7942_1095 0.77 -1.1
1,113,241 + +0.9
1,113,241 + +1.8
1,113,249 - +0.3
1,113,249 - -1.1
1,113,302 + -0.6
1,113,312 - +1.2
1,113,334 + +1.7
1,113,334 + +2.5
1,113,334 + +1.1
1,113,334 + -1.7
1,113,334 + +1.3
1,113,342 - -0.3
1,113,342 - +0.7
1,113,342 - +1.8
1,113,342 - +0.6

Or see this region's nucleotide sequence