Strain Fitness in Sinorhizobium meliloti 1021 around SMc03802

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03801 and SMc03802 are separated by 144 nucleotidesSMc03802 and SMc03803 are separated by 8 nucleotidesSMc03803 and SMc03804 are separated by 424 nucleotides SMc03801: SMc03801 - thioredoxin protein, at 3,466,366 to 3,467,358 SMc03801 SMc03802: SMc03802 - hypothetical protein, at 3,467,503 to 3,468,183 SMc03802 SMc03803: SMc03803 - hypothetical protein, at 3,468,192 to 3,468,380 SMc03803 SMc03804: SMc03804 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,468,805 to 3,470,031 SMc03804 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -2 -1 0 1 2at 3466.515 kb on + strand, within SMc03801at 3466.908 kb on - strand, within SMc03801at 3466.964 kb on - strand, within SMc03801at 3467.291 kb on + strandat 3467.356 kb on + strandat 3467.525 kb on - strandat 3467.610 kb on + strand, within SMc03802at 3467.611 kb on - strand, within SMc03802at 3467.611 kb on - strand, within SMc03802at 3467.629 kb on + strandat 3467.748 kb on - strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3468.022 kb on - strand, within SMc03802at 3468.172 kb on - strandat 3468.489 kb on + strandat 3468.490 kb on - strandat 3468.490 kb on - strandat 3468.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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3,466,515 + SMc03801 0.15 +0.5
3,466,908 - SMc03801 0.55 -0.5
3,466,964 - SMc03801 0.60 +0.1
3,467,291 + -0.1
3,467,356 + +0.1
3,467,525 - -0.3
3,467,610 + SMc03802 0.16 -1.8
3,467,611 - SMc03802 0.16 -1.3
3,467,611 - SMc03802 0.16 -1.9
3,467,629 + -0.7
3,467,748 - SMc03802 0.36 -0.4
3,467,797 + SMc03802 0.43 +0.3
3,467,797 + SMc03802 0.43 -0.3
3,467,797 + SMc03802 0.43 +0.0
3,468,022 - SMc03802 0.76 -0.1
3,468,172 - -0.2
3,468,489 + -0.1
3,468,490 - +2.5
3,468,490 - +0.6
3,468,490 - +0.6

Or see this region's nucleotide sequence