Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02896 and SMc02897 are separated by 171 nucleotides SMc02897 and SMc02898 are separated by 153 nucleotides SMc02898 and SMc02899 are separated by 24 nucleotides
SMc02896: SMc02896 - branched-chain amino acid aminotransferase, at 253,002 to 254,099
SMc02896
SMc02897: SMc02897 - cytochrome C transmembrane protein, at 254,271 to 255,050
SMc02897
SMc02898: SMc02898 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 255,204 to 255,956
SMc02898
SMc02899: SMc02899 - prephenate dehydratase, at 255,981 to 256,835
SMc02899
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 253.474 kb on + strand, within SMc02896 at 253.474 kb on + strand, within SMc02896 at 253.542 kb on + strand, within SMc02896 at 253.543 kb on - strand, within SMc02896 at 253.543 kb on - strand, within SMc02896 at 253.547 kb on + strand, within SMc02896 at 253.603 kb on + strand, within SMc02896 at 253.604 kb on - strand, within SMc02896 at 253.604 kb on - strand, within SMc02896 at 253.609 kb on + strand, within SMc02896 at 253.609 kb on + strand, within SMc02896 at 253.669 kb on + strand, within SMc02896 at 253.670 kb on - strand, within SMc02896 at 253.850 kb on - strand, within SMc02896 at 253.859 kb on + strand, within SMc02896 at 253.860 kb on - strand, within SMc02896 at 253.860 kb on - strand, within SMc02896 at 253.883 kb on - strand, within SMc02896 at 254.148 kb on + strand at 254.148 kb on + strand at 254.148 kb on + strand at 254.148 kb on + strand at 254.149 kb on - strand at 254.149 kb on - strand at 254.172 kb on + strand at 254.172 kb on + strand at 254.173 kb on + strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.174 kb on + strand at 254.174 kb on + strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.635 kb on + strand, within SMc02897 at 254.636 kb on - strand, within SMc02897 at 254.650 kb on + strand, within SMc02897 at 254.651 kb on - strand, within SMc02897 at 255.040 kb on + strand at 255.041 kb on - strand at 255.041 kb on - strand at 255.115 kb on + strand at 255.116 kb on - strand at 255.116 kb on - strand at 255.191 kb on + strand at 255.191 kb on + strand at 255.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 253,474 + SMc02896 0.43 -0.1 253,474 + SMc02896 0.43 -0.1 253,542 + SMc02896 0.49 +0.5 253,543 - SMc02896 0.49 -2.4 253,543 - SMc02896 0.49 -1.6 253,547 + SMc02896 0.50 -0.0 253,603 + SMc02896 0.55 -1.4 253,604 - SMc02896 0.55 +0.1 253,604 - SMc02896 0.55 -0.3 253,609 + SMc02896 0.55 +0.7 253,609 + SMc02896 0.55 -0.6 253,669 + SMc02896 0.61 -0.0 253,670 - SMc02896 0.61 -0.6 253,850 - SMc02896 0.77 +1.2 253,859 + SMc02896 0.78 +0.8 253,860 - SMc02896 0.78 +0.9 253,860 - SMc02896 0.78 -0.7 253,883 - SMc02896 0.80 -1.3 254,148 + -0.3 254,148 + +1.7 254,148 + +3.4 254,148 + -1.1 254,149 - +0.2 254,149 - -2.4 254,172 + +0.3 254,172 + -1.3 254,173 + +0.4 254,173 - +0.1 254,173 - +0.1 254,173 - +1.1 254,173 - +0.3 254,174 + +0.2 254,174 + +1.4 254,175 - +0.9 254,175 - -1.7 254,175 - +0.2 254,175 - +1.7 254,635 + SMc02897 0.47 -0.2 254,636 - SMc02897 0.47 -0.7 254,650 + SMc02897 0.49 -1.4 254,651 - SMc02897 0.49 -1.6 255,040 + -0.1 255,041 - -3.2 255,041 - +0.1 255,115 + -2.6 255,116 - -2.3 255,116 - -0.1 255,191 + -0.6 255,191 + +0.2 255,192 - -0.1
Or see this region's nucleotide sequence