Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02313 and SMc02314 are separated by 612 nucleotides SMc02314 and SMc02315 overlap by 14 nucleotides
SMc02313: SMc02313 - hypothetical protein, at 684,838 to 685,194
SMc02313
SMc02314: SMc02314 - hypothetical protein, at 685,807 to 686,907
SMc02314
SMc02315: SMc02315 - hypothetical protein, at 686,894 to 687,976
SMc02315
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1 at 684.856 kb on - strand at 684.856 kb on - strand at 684.856 kb on - strand at 684.860 kb on - strand at 684.896 kb on - strand, within SMc02313 at 685.018 kb on - strand, within SMc02313 at 685.319 kb on + strand at 685.320 kb on - strand at 685.324 kb on - strand at 685.400 kb on + strand at 685.400 kb on + strand at 685.400 kb on + strand at 685.422 kb on - strand at 685.512 kb on - strand at 685.530 kb on - strand at 685.549 kb on + strand at 685.550 kb on - strand at 685.662 kb on + strand at 685.662 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.694 kb on + strand at 685.909 kb on - strand at 685.915 kb on + strand at 685.915 kb on + strand at 685.916 kb on - strand at 686.021 kb on - strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.129 kb on + strand, within SMc02314 at 686.130 kb on - strand, within SMc02314 at 686.134 kb on + strand, within SMc02314 at 686.143 kb on - strand, within SMc02314 at 686.172 kb on - strand, within SMc02314 at 686.215 kb on + strand, within SMc02314 at 686.621 kb on - strand, within SMc02314 at 686.621 kb on - strand, within SMc02314 at 686.770 kb on - strand, within SMc02314 at 686.851 kb on + strand at 686.851 kb on + strand at 686.852 kb on - strand at 686.854 kb on - strand at 686.873 kb on + strand at 686.905 kb on + strand at 686.906 kb on - strand at 686.906 kb on - strand at 686.909 kb on + strand at 687.038 kb on + strand, within SMc02315 at 687.039 kb on - strand, within SMc02315 at 687.086 kb on + strand, within SMc02315 at 687.141 kb on + strand, within SMc02315 at 687.142 kb on - strand, within SMc02315 at 687.250 kb on + strand, within SMc02315 at 687.462 kb on - strand, within SMc02315 at 687.480 kb on + strand, within SMc02315 at 687.569 kb on + strand, within SMc02315 at 687.569 kb on + strand, within SMc02315 at 687.810 kb on - strand, within SMc02315 at 687.810 kb on - strand, within SMc02315 at 687.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 684,856 - -0.2 684,856 - +1.5 684,856 - -0.4 684,860 - -0.6 684,896 - SMc02313 0.16 +0.3 685,018 - SMc02313 0.50 +0.7 685,319 + -1.0 685,320 - +0.7 685,324 - +0.4 685,400 + +0.3 685,400 + -0.9 685,400 + -0.4 685,422 - +0.0 685,512 - -1.4 685,530 - +0.3 685,549 + -1.5 685,550 - -0.3 685,662 + -1.2 685,662 + +0.7 685,682 + -0.2 685,682 + +0.5 685,682 + +0.2 685,682 + +0.2 685,682 + +0.3 685,694 + -0.4 685,909 - -0.0 685,915 + -0.0 685,915 + -0.2 685,916 - -0.8 686,021 - SMc02314 0.19 -1.4 686,029 + SMc02314 0.20 +0.2 686,029 + SMc02314 0.20 +0.5 686,029 + SMc02314 0.20 -0.7 686,029 + SMc02314 0.20 -0.6 686,029 + SMc02314 0.20 -1.7 686,030 - SMc02314 0.20 -0.4 686,030 - SMc02314 0.20 +0.2 686,030 - SMc02314 0.20 +0.1 686,030 - SMc02314 0.20 -0.3 686,030 - SMc02314 0.20 -1.4 686,030 - SMc02314 0.20 +0.5 686,030 - SMc02314 0.20 -0.3 686,129 + SMc02314 0.29 -0.7 686,130 - SMc02314 0.29 -1.3 686,134 + SMc02314 0.30 -0.1 686,143 - SMc02314 0.31 -0.9 686,172 - SMc02314 0.33 +0.1 686,215 + SMc02314 0.37 -0.9 686,621 - SMc02314 0.74 -0.3 686,621 - SMc02314 0.74 -0.2 686,770 - SMc02314 0.87 -1.4 686,851 + +0.4 686,851 + +0.7 686,852 - +0.1 686,854 - -2.5 686,873 + +1.0 686,905 + -0.5 686,906 - +1.1 686,906 - +0.1 686,909 + +0.2 687,038 + SMc02315 0.13 -0.1 687,039 - SMc02315 0.13 -0.5 687,086 + SMc02315 0.18 -0.2 687,141 + SMc02315 0.23 -0.1 687,142 - SMc02315 0.23 +0.2 687,250 + SMc02315 0.33 -0.1 687,462 - SMc02315 0.52 -0.2 687,480 + SMc02315 0.54 -0.5 687,569 + SMc02315 0.62 -2.1 687,569 + SMc02315 0.62 -0.2 687,810 - SMc02315 0.85 -1.0 687,810 - SMc02315 0.85 +0.9 687,894 - -0.2
Or see this region's nucleotide sequence