Strain Fitness in Sinorhizobium meliloti 1021 around SMc01651

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01650 and SMc01651 are separated by 119 nucleotidesSMc01651 and SMc01652 are separated by 123 nucleotides SMc01650: SMc01650 - esterase/lipase, at 2,447,133 to 2,448,056 SMc01650 SMc01651: SMc01651 - transcriptional regulator, at 2,448,176 to 2,449,084 SMc01651 SMc01652: SMc01652 - ABC transporter, at 2,449,208 to 2,450,368 SMc01652 Position (kb) 2448 2449 2450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2447.251 kb on + strand, within SMc01650at 2447.252 kb on - strand, within SMc01650at 2447.291 kb on - strand, within SMc01650at 2447.323 kb on + strand, within SMc01650at 2447.338 kb on + strand, within SMc01650at 2447.473 kb on + strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.509 kb on + strand, within SMc01650at 2447.509 kb on + strand, within SMc01650at 2447.563 kb on - strand, within SMc01650at 2447.595 kb on - strand, within SMc01650at 2447.798 kb on + strand, within SMc01650at 2447.799 kb on - strand, within SMc01650at 2447.799 kb on - strand, within SMc01650at 2447.800 kb on + strand, within SMc01650at 2447.800 kb on + strand, within SMc01650at 2447.842 kb on + strand, within SMc01650at 2447.932 kb on + strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.980 kb on + strandat 2447.980 kb on + strandat 2448.080 kb on - strandat 2448.166 kb on + strandat 2448.204 kb on - strandat 2448.793 kb on + strand, within SMc01651at 2448.793 kb on + strand, within SMc01651at 2449.101 kb on + strandat 2449.126 kb on + strandat 2449.240 kb on + strandat 2449.240 kb on + strandat 2449.241 kb on - strandat 2449.340 kb on + strand, within SMc01652at 2449.342 kb on + strand, within SMc01652at 2449.543 kb on + strand, within SMc01652at 2449.623 kb on - strand, within SMc01652at 2449.623 kb on - strandat 2449.634 kb on + strand, within SMc01652at 2449.634 kb on + strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.661 kb on + strand, within SMc01652at 2449.661 kb on + strand, within SMc01652at 2449.662 kb on - strand, within SMc01652at 2449.662 kb on - strand, within SMc01652at 2449.666 kb on + strand, within SMc01652at 2449.766 kb on + strand, within SMc01652at 2449.766 kb on + strand, within SMc01652at 2449.767 kb on - strand, within SMc01652at 2449.767 kb on - strand, within SMc01652at 2449.802 kb on + strand, within SMc01652at 2449.802 kb on + strand, within SMc01652at 2449.803 kb on - strand, within SMc01652at 2449.844 kb on + strand, within SMc01652at 2449.865 kb on + strand, within SMc01652at 2449.865 kb on + strand, within SMc01652

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,447,251 + SMc01650 0.13 -0.2
2,447,252 - SMc01650 0.13 +0.8
2,447,291 - SMc01650 0.17 -0.3
2,447,323 + SMc01650 0.21 +1.8
2,447,338 + SMc01650 0.22 +0.4
2,447,473 + SMc01650 0.37 +0.1
2,447,474 - SMc01650 0.37 +0.6
2,447,474 - SMc01650 0.37 +0.9
2,447,474 - SMc01650 0.37 -0.1
2,447,474 - SMc01650 0.37 -0.4
2,447,474 - SMc01650 0.37 +0.6
2,447,509 + SMc01650 0.41 -0.1
2,447,509 + SMc01650 0.41 -1.0
2,447,563 - SMc01650 0.47 +1.3
2,447,595 - SMc01650 0.50 -0.5
2,447,798 + SMc01650 0.72 +0.4
2,447,799 - SMc01650 0.72 -0.2
2,447,799 - SMc01650 0.72 +0.3
2,447,800 + SMc01650 0.72 +0.6
2,447,800 + SMc01650 0.72 +0.4
2,447,842 + SMc01650 0.77 -1.3
2,447,932 + SMc01650 0.86 -0.2
2,447,933 - SMc01650 0.87 +0.0
2,447,933 - SMc01650 0.87 +0.8
2,447,933 - SMc01650 0.87 +0.4
2,447,933 - SMc01650 0.87 -0.5
2,447,933 - SMc01650 0.87 +0.3
2,447,980 + -0.1
2,447,980 + -0.7
2,448,080 - -0.1
2,448,166 + -0.2
2,448,204 - -1.0
2,448,793 + SMc01651 0.68 -1.8
2,448,793 + SMc01651 0.68 -1.0
2,449,101 + +0.2
2,449,126 + +0.1
2,449,240 + +0.4
2,449,240 + -0.1
2,449,241 - +0.1
2,449,340 + SMc01652 0.11 +1.3
2,449,342 + SMc01652 0.12 -0.8
2,449,543 + SMc01652 0.29 -0.6
2,449,623 - SMc01652 0.36 -0.8
2,449,623 - +1.2
2,449,634 + SMc01652 0.37 +0.6
2,449,634 + SMc01652 0.37 -0.7
2,449,635 - SMc01652 0.37 +0.1
2,449,635 - SMc01652 0.37 +0.5
2,449,635 - SMc01652 0.37 -0.7
2,449,661 + SMc01652 0.39 +0.5
2,449,661 + SMc01652 0.39 -1.1
2,449,662 - SMc01652 0.39 +1.0
2,449,662 - SMc01652 0.39 +0.8
2,449,666 + SMc01652 0.39 -0.4
2,449,766 + SMc01652 0.48 +1.6
2,449,766 + SMc01652 0.48 -0.2
2,449,767 - SMc01652 0.48 -3.9
2,449,767 - SMc01652 0.48 +0.5
2,449,802 + SMc01652 0.51 -0.5
2,449,802 + SMc01652 0.51 -2.5
2,449,803 - SMc01652 0.51 -0.3
2,449,844 + SMc01652 0.55 +0.1
2,449,865 + SMc01652 0.57 -0.1
2,449,865 + SMc01652 0.57 -3.3

Or see this region's nucleotide sequence