Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01650 and SMc01651 are separated by 119 nucleotides SMc01651 and SMc01652 are separated by 123 nucleotides
SMc01650: SMc01650 - esterase/lipase, at 2,447,133 to 2,448,056
SMc01650
SMc01651: SMc01651 - transcriptional regulator, at 2,448,176 to 2,449,084
SMc01651
SMc01652: SMc01652 - ABC transporter, at 2,449,208 to 2,450,368
SMc01652
Position (kb)
2448
2449
2450 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2447.251 kb on + strand, within SMc01650 at 2447.252 kb on - strand, within SMc01650 at 2447.291 kb on - strand, within SMc01650 at 2447.323 kb on + strand, within SMc01650 at 2447.338 kb on + strand, within SMc01650 at 2447.473 kb on + strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.509 kb on + strand, within SMc01650 at 2447.509 kb on + strand, within SMc01650 at 2447.563 kb on - strand, within SMc01650 at 2447.595 kb on - strand, within SMc01650 at 2447.798 kb on + strand, within SMc01650 at 2447.799 kb on - strand, within SMc01650 at 2447.799 kb on - strand, within SMc01650 at 2447.800 kb on + strand, within SMc01650 at 2447.800 kb on + strand, within SMc01650 at 2447.842 kb on + strand, within SMc01650 at 2447.932 kb on + strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.980 kb on + strand at 2447.980 kb on + strand at 2448.080 kb on - strand at 2448.166 kb on + strand at 2448.204 kb on - strand at 2448.793 kb on + strand, within SMc01651 at 2448.793 kb on + strand, within SMc01651 at 2449.101 kb on + strand at 2449.126 kb on + strand at 2449.240 kb on + strand at 2449.240 kb on + strand at 2449.241 kb on - strand at 2449.340 kb on + strand, within SMc01652 at 2449.342 kb on + strand, within SMc01652 at 2449.543 kb on + strand, within SMc01652 at 2449.623 kb on - strand, within SMc01652 at 2449.623 kb on - strand at 2449.634 kb on + strand, within SMc01652 at 2449.634 kb on + strand, within SMc01652 at 2449.635 kb on - strand, within SMc01652 at 2449.635 kb on - strand, within SMc01652 at 2449.635 kb on - strand, within SMc01652 at 2449.661 kb on + strand, within SMc01652 at 2449.661 kb on + strand, within SMc01652 at 2449.662 kb on - strand, within SMc01652 at 2449.662 kb on - strand, within SMc01652 at 2449.666 kb on + strand, within SMc01652 at 2449.766 kb on + strand, within SMc01652 at 2449.766 kb on + strand, within SMc01652 at 2449.767 kb on - strand, within SMc01652 at 2449.767 kb on - strand, within SMc01652 at 2449.802 kb on + strand, within SMc01652 at 2449.802 kb on + strand, within SMc01652 at 2449.803 kb on - strand, within SMc01652 at 2449.844 kb on + strand, within SMc01652 at 2449.865 kb on + strand, within SMc01652 at 2449.865 kb on + strand, within SMc01652
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,447,251 + SMc01650 0.13 -0.2 2,447,252 - SMc01650 0.13 +0.8 2,447,291 - SMc01650 0.17 -0.3 2,447,323 + SMc01650 0.21 +1.8 2,447,338 + SMc01650 0.22 +0.4 2,447,473 + SMc01650 0.37 +0.1 2,447,474 - SMc01650 0.37 +0.6 2,447,474 - SMc01650 0.37 +0.9 2,447,474 - SMc01650 0.37 -0.1 2,447,474 - SMc01650 0.37 -0.4 2,447,474 - SMc01650 0.37 +0.6 2,447,509 + SMc01650 0.41 -0.1 2,447,509 + SMc01650 0.41 -1.0 2,447,563 - SMc01650 0.47 +1.3 2,447,595 - SMc01650 0.50 -0.5 2,447,798 + SMc01650 0.72 +0.4 2,447,799 - SMc01650 0.72 -0.2 2,447,799 - SMc01650 0.72 +0.3 2,447,800 + SMc01650 0.72 +0.6 2,447,800 + SMc01650 0.72 +0.4 2,447,842 + SMc01650 0.77 -1.3 2,447,932 + SMc01650 0.86 -0.2 2,447,933 - SMc01650 0.87 +0.0 2,447,933 - SMc01650 0.87 +0.8 2,447,933 - SMc01650 0.87 +0.4 2,447,933 - SMc01650 0.87 -0.5 2,447,933 - SMc01650 0.87 +0.3 2,447,980 + -0.1 2,447,980 + -0.7 2,448,080 - -0.1 2,448,166 + -0.2 2,448,204 - -1.0 2,448,793 + SMc01651 0.68 -1.8 2,448,793 + SMc01651 0.68 -1.0 2,449,101 + +0.2 2,449,126 + +0.1 2,449,240 + +0.4 2,449,240 + -0.1 2,449,241 - +0.1 2,449,340 + SMc01652 0.11 +1.3 2,449,342 + SMc01652 0.12 -0.8 2,449,543 + SMc01652 0.29 -0.6 2,449,623 - SMc01652 0.36 -0.8 2,449,623 - +1.2 2,449,634 + SMc01652 0.37 +0.6 2,449,634 + SMc01652 0.37 -0.7 2,449,635 - SMc01652 0.37 +0.1 2,449,635 - SMc01652 0.37 +0.5 2,449,635 - SMc01652 0.37 -0.7 2,449,661 + SMc01652 0.39 +0.5 2,449,661 + SMc01652 0.39 -1.1 2,449,662 - SMc01652 0.39 +1.0 2,449,662 - SMc01652 0.39 +0.8 2,449,666 + SMc01652 0.39 -0.4 2,449,766 + SMc01652 0.48 +1.6 2,449,766 + SMc01652 0.48 -0.2 2,449,767 - SMc01652 0.48 -3.9 2,449,767 - SMc01652 0.48 +0.5 2,449,802 + SMc01652 0.51 -0.5 2,449,802 + SMc01652 0.51 -2.5 2,449,803 - SMc01652 0.51 -0.3 2,449,844 + SMc01652 0.55 +0.1 2,449,865 + SMc01652 0.57 -0.1 2,449,865 + SMc01652 0.57 -3.3
Or see this region's nucleotide sequence