Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01459 and SMc01460 are separated by 16 nucleotides SMc01460 and SMc01461 are separated by 125 nucleotides
SMc01459: SMc01459 - hypothetical protein, at 2,305,476 to 2,306,297
SMc01459
SMc01460: SMc01460 - hypothetical protein, at 2,306,314 to 2,306,724
SMc01460
SMc01461: SMc01461 - DNA helicase II protein, at 2,306,850 to 2,309,423
SMc01461
Position (kb)
2306
2307 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2305.397 kb on + strand at 2305.398 kb on - strand at 2305.591 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.106 kb on - strand, within SMc01459 at 2306.151 kb on + strand, within SMc01459 at 2306.415 kb on + strand, within SMc01460 at 2306.415 kb on + strand, within SMc01460 at 2306.415 kb on + strand, within SMc01460 at 2306.415 kb on + strand, within SMc01460 at 2306.415 kb on + strand, within SMc01460 at 2306.415 kb on + strand, within SMc01460 at 2306.416 kb on - strand, within SMc01460 at 2306.416 kb on - strand, within SMc01460 at 2306.416 kb on - strand, within SMc01460 at 2306.416 kb on - strand, within SMc01460 at 2306.527 kb on + strand, within SMc01460 at 2306.529 kb on + strand, within SMc01460 at 2306.530 kb on - strand, within SMc01460 at 2306.560 kb on + strand, within SMc01460 at 2306.560 kb on + strand, within SMc01460 at 2306.722 kb on + strand at 2306.722 kb on + strand at 2306.723 kb on - strand at 2306.976 kb on + strand at 2306.976 kb on + strand at 2307.490 kb on - strand, within SMc01461 at 2307.598 kb on - strand, within SMc01461 at 2307.657 kb on + strand, within SMc01461 at 2307.658 kb on - strand, within SMc01461 at 2307.660 kb on - strand, within SMc01461
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,305,397 + -0.4 2,305,398 - -2.2 2,305,591 + SMc01459 0.14 -0.0 2,306,105 + SMc01459 0.77 -0.7 2,306,105 + SMc01459 0.77 +0.5 2,306,106 - SMc01459 0.77 +0.5 2,306,151 + SMc01459 0.82 -2.1 2,306,415 + SMc01460 0.25 -0.5 2,306,415 + SMc01460 0.25 +0.3 2,306,415 + SMc01460 0.25 -1.3 2,306,415 + SMc01460 0.25 -0.1 2,306,415 + SMc01460 0.25 -0.2 2,306,415 + SMc01460 0.25 +0.0 2,306,416 - SMc01460 0.25 -0.6 2,306,416 - SMc01460 0.25 +0.1 2,306,416 - SMc01460 0.25 -0.7 2,306,416 - SMc01460 0.25 -1.4 2,306,527 + SMc01460 0.52 -0.3 2,306,529 + SMc01460 0.52 -0.8 2,306,530 - SMc01460 0.53 +0.6 2,306,560 + SMc01460 0.60 -0.4 2,306,560 + SMc01460 0.60 -0.6 2,306,722 + -0.5 2,306,722 + -1.0 2,306,723 - +0.5 2,306,976 + -0.0 2,306,976 + -0.3 2,307,490 - SMc01461 0.25 -2.5 2,307,598 - SMc01461 0.29 -1.2 2,307,657 + SMc01461 0.31 -1.9 2,307,658 - SMc01461 0.31 +2.4 2,307,660 - SMc01461 0.31 -0.6
Or see this region's nucleotide sequence