Strain Fitness in Sinorhizobium meliloti 1021 around SMc01460

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01459 and SMc01460 are separated by 16 nucleotidesSMc01460 and SMc01461 are separated by 125 nucleotides SMc01459: SMc01459 - hypothetical protein, at 2,305,476 to 2,306,297 SMc01459 SMc01460: SMc01460 - hypothetical protein, at 2,306,314 to 2,306,724 SMc01460 SMc01461: SMc01461 - DNA helicase II protein, at 2,306,850 to 2,309,423 SMc01461 Position (kb) 2306 2307Strain fitness (log2 ratio) -2 -1 0 1 2at 2305.397 kb on + strandat 2305.398 kb on - strandat 2305.591 kb on + strand, within SMc01459at 2306.105 kb on + strand, within SMc01459at 2306.105 kb on + strand, within SMc01459at 2306.106 kb on - strand, within SMc01459at 2306.151 kb on + strand, within SMc01459at 2306.415 kb on + strand, within SMc01460at 2306.415 kb on + strand, within SMc01460at 2306.415 kb on + strand, within SMc01460at 2306.415 kb on + strand, within SMc01460at 2306.415 kb on + strand, within SMc01460at 2306.415 kb on + strand, within SMc01460at 2306.416 kb on - strand, within SMc01460at 2306.416 kb on - strand, within SMc01460at 2306.416 kb on - strand, within SMc01460at 2306.416 kb on - strand, within SMc01460at 2306.527 kb on + strand, within SMc01460at 2306.529 kb on + strand, within SMc01460at 2306.530 kb on - strand, within SMc01460at 2306.560 kb on + strand, within SMc01460at 2306.560 kb on + strand, within SMc01460at 2306.722 kb on + strandat 2306.722 kb on + strandat 2306.723 kb on - strandat 2306.976 kb on + strandat 2306.976 kb on + strandat 2307.490 kb on - strand, within SMc01461at 2307.598 kb on - strand, within SMc01461at 2307.657 kb on + strand, within SMc01461at 2307.658 kb on - strand, within SMc01461at 2307.660 kb on - strand, within SMc01461

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,305,397 + -0.4
2,305,398 - -2.2
2,305,591 + SMc01459 0.14 -0.0
2,306,105 + SMc01459 0.77 -0.7
2,306,105 + SMc01459 0.77 +0.5
2,306,106 - SMc01459 0.77 +0.5
2,306,151 + SMc01459 0.82 -2.1
2,306,415 + SMc01460 0.25 -0.5
2,306,415 + SMc01460 0.25 +0.3
2,306,415 + SMc01460 0.25 -1.3
2,306,415 + SMc01460 0.25 -0.1
2,306,415 + SMc01460 0.25 -0.2
2,306,415 + SMc01460 0.25 +0.0
2,306,416 - SMc01460 0.25 -0.6
2,306,416 - SMc01460 0.25 +0.1
2,306,416 - SMc01460 0.25 -0.7
2,306,416 - SMc01460 0.25 -1.4
2,306,527 + SMc01460 0.52 -0.3
2,306,529 + SMc01460 0.52 -0.8
2,306,530 - SMc01460 0.53 +0.6
2,306,560 + SMc01460 0.60 -0.4
2,306,560 + SMc01460 0.60 -0.6
2,306,722 + -0.5
2,306,722 + -1.0
2,306,723 - +0.5
2,306,976 + -0.0
2,306,976 + -0.3
2,307,490 - SMc01461 0.25 -2.5
2,307,598 - SMc01461 0.29 -1.2
2,307,657 + SMc01461 0.31 -1.9
2,307,658 - SMc01461 0.31 +2.4
2,307,660 - SMc01461 0.31 -0.6

Or see this region's nucleotide sequence