Strain Fitness in Sinorhizobium meliloti 1021 around SMc01026

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01025 and SMc01026 are separated by 152 nucleotidesSMc01026 and SMc01027 overlap by 1 nucleotidesSMc01027 and SMc01028 are separated by 134 nucleotides SMc01025: SMc01025 - CTP synthetase, at 1,549,799 to 1,551,427 SMc01025 SMc01026: SMc01026 - hypothetical protein, at 1,551,580 to 1,552,470 SMc01026 SMc01027: SMc01027 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,552,470 to 1,553,312 SMc01027 SMc01028: SMc01028 - phosphopyruvate hydratase, at 1,553,447 to 1,554,721 SMc01028 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -2 -1 0 1at 1551.426 kb on - strandat 1551.748 kb on + strand, within SMc01026at 1551.748 kb on + strand, within SMc01026at 1551.749 kb on - strand, within SMc01026at 1552.168 kb on + strand, within SMc01026at 1552.448 kb on + strandat 1552.448 kb on + strandat 1553.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,551,426 - +0.2
1,551,748 + SMc01026 0.19 -1.0
1,551,748 + SMc01026 0.19 -1.4
1,551,749 - SMc01026 0.19 -1.8
1,552,168 + SMc01026 0.66 +0.9
1,552,448 + +1.7
1,552,448 + +1.1
1,553,385 + +0.5

Or see this region's nucleotide sequence