Strain Fitness in Sinorhizobium meliloti 1021 around SMc00790

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00788 and SMc00789 are separated by 1 nucleotidesSMc00789 and SMc00790 overlap by 4 nucleotidesSMc00790 and SMc00791 are separated by 64 nucleotidesSMc00791 and SMc00792 are separated by 152 nucleotidesSMc00792 and SMc00793 are separated by 101 nucleotides SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109 SMc00788 SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965 SMc00789 SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789 SMc00790 SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198 SMc00791 SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521 SMc00792 SMc00793: SMc00793 - permease, at 813,623 to 814,753 SMc00793 Position (kb) 811 812 813Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 811.028 kb on + strandat 811.028 kb on + strandat 811.084 kb on + strandat 811.085 kb on - strandat 811.085 kb on - strandat 811.334 kb on + strand, within SMc00789at 811.463 kb on + strand, within SMc00789at 811.467 kb on + strand, within SMc00789at 811.467 kb on + strand, within SMc00789at 811.467 kb on + strand, within SMc00789at 811.468 kb on - strand, within SMc00789at 811.468 kb on - strand, within SMc00789at 811.468 kb on - strand, within SMc00789at 811.468 kb on - strand, within SMc00789at 811.523 kb on + strand, within SMc00789at 811.747 kb on - strand, within SMc00789at 811.855 kb on + strand, within SMc00789at 812.001 kb on + strandat 812.059 kb on + strand, within SMc00790at 812.059 kb on + strand, within SMc00790at 812.123 kb on + strand, within SMc00790at 812.124 kb on - strand, within SMc00790at 812.124 kb on - strand, within SMc00790at 812.400 kb on + strand, within SMc00790at 812.400 kb on + strand, within SMc00790at 812.524 kb on + strand, within SMc00790at 812.525 kb on - strand, within SMc00790at 812.580 kb on + strand, within SMc00790at 812.580 kb on + strand, within SMc00790at 812.580 kb on + strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.581 kb on - strand, within SMc00790at 812.616 kb on + strand, within SMc00790at 812.616 kb on + strand, within SMc00790at 812.616 kb on + strand, within SMc00790at 812.632 kb on + strand, within SMc00790at 812.632 kb on + strand, within SMc00790at 812.633 kb on - strand, within SMc00790at 812.643 kb on + strand, within SMc00790at 812.643 kb on + strand, within SMc00790at 812.644 kb on - strand, within SMc00790at 812.644 kb on - strand, within SMc00790at 812.644 kb on - strand, within SMc00790at 812.664 kb on + strand, within SMc00790at 812.665 kb on - strand, within SMc00790at 812.707 kb on - strandat 812.708 kb on + strandat 812.708 kb on + strandat 812.708 kb on + strandat 812.709 kb on - strandat 812.709 kb on - strandat 812.797 kb on + strandat 812.797 kb on + strandat 812.798 kb on - strandat 812.798 kb on - strandat 812.798 kb on - strandat 812.798 kb on - strandat 812.798 kb on - strandat 812.801 kb on + strandat 812.801 kb on + strandat 812.838 kb on + strandat 812.839 kb on - strandat 812.905 kb on + strand, within SMc00791at 812.905 kb on + strand, within SMc00791at 813.164 kb on - strandat 813.218 kb on + strandat 813.219 kb on - strandat 813.219 kb on - strandat 813.220 kb on + strandat 813.220 kb on + strandat 813.220 kb on + strandat 813.220 kb on + strandat 813.220 kb on + strandat 813.221 kb on - strandat 813.221 kb on - strandat 813.221 kb on - strandat 813.221 kb on - strandat 813.278 kb on - strandat 813.321 kb on - strandat 813.357 kb on + strandat 813.401 kb on - strand, within SMc00792at 813.401 kb on - strand, within SMc00792at 813.401 kb on - strand, within SMc00792at 813.445 kb on - strand, within SMc00792at 813.445 kb on - strand, within SMc00792at 813.445 kb on - strand, within SMc00792at 813.614 kb on + strandat 813.614 kb on + strandat 813.614 kb on + strandat 813.614 kb on + strandat 813.614 kb on + strandat 813.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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811,028 + -2.3
811,028 + -2.2
811,084 + -1.9
811,085 - -2.9
811,085 - -1.1
811,334 + SMc00789 0.26 +0.2
811,463 + SMc00789 0.41 -1.9
811,467 + SMc00789 0.42 -1.6
811,467 + SMc00789 0.42 -3.8
811,467 + SMc00789 0.42 -1.8
811,468 - SMc00789 0.42 -1.8
811,468 - SMc00789 0.42 -3.4
811,468 - SMc00789 0.42 +3.0
811,468 - SMc00789 0.42 -3.1
811,523 + SMc00789 0.48 -3.0
811,747 - SMc00789 0.74 -0.9
811,855 + SMc00789 0.87 +1.7
812,001 + -3.3
812,059 + SMc00790 0.12 -2.4
812,059 + SMc00790 0.12 -2.9
812,123 + SMc00790 0.19 -3.2
812,124 - SMc00790 0.20 -2.9
812,124 - SMc00790 0.20 -3.1
812,400 + SMc00790 0.53 -3.1
812,400 + SMc00790 0.53 -1.2
812,524 + SMc00790 0.68 -2.9
812,525 - SMc00790 0.68 -1.2
812,580 + SMc00790 0.75 -2.8
812,580 + SMc00790 0.75 +2.0
812,580 + SMc00790 0.75 -2.7
812,581 - SMc00790 0.75 -3.0
812,581 - SMc00790 0.75 -0.5
812,581 - SMc00790 0.75 -3.5
812,581 - SMc00790 0.75 -1.9
812,581 - SMc00790 0.75 -2.5
812,581 - SMc00790 0.75 -0.6
812,616 + SMc00790 0.79 -2.1
812,616 + SMc00790 0.79 -1.3
812,616 + SMc00790 0.79 -2.9
812,632 + SMc00790 0.81 +1.7
812,632 + SMc00790 0.81 -3.7
812,633 - SMc00790 0.81 -2.7
812,643 + SMc00790 0.82 -2.1
812,643 + SMc00790 0.82 -0.3
812,644 - SMc00790 0.82 -3.0
812,644 - SMc00790 0.82 -2.5
812,644 - SMc00790 0.82 -3.1
812,664 + SMc00790 0.85 -2.8
812,665 - SMc00790 0.85 -1.8
812,707 - -2.8
812,708 + -2.4
812,708 + -1.5
812,708 + -2.5
812,709 - -2.1
812,709 - -1.8
812,797 + -3.4
812,797 + -2.1
812,798 - -1.1
812,798 - -1.9
812,798 - -0.4
812,798 - -2.9
812,798 - -1.0
812,801 + -1.1
812,801 + -1.6
812,838 + -0.6
812,839 - -3.0
812,905 + SMc00791 0.15 -0.7
812,905 + SMc00791 0.15 -2.2
813,164 - -0.8
813,218 + +0.0
813,219 - +0.9
813,219 - -0.7
813,220 + -0.2
813,220 + -0.3
813,220 + +1.7
813,220 + -1.8
813,220 + -1.9
813,221 - +0.7
813,221 - -0.7
813,221 - -2.0
813,221 - -1.9
813,278 - -0.7
813,321 - -0.8
813,357 + +1.0
813,401 - SMc00792 0.29 -0.2
813,401 - SMc00792 0.29 -0.1
813,401 - SMc00792 0.29 +1.7
813,445 - SMc00792 0.55 +0.6
813,445 - SMc00792 0.55 -0.3
813,445 - SMc00792 0.55 -1.6
813,614 + -0.3
813,614 + +0.4
813,614 + +0.7
813,614 + +2.1
813,614 + +0.4
813,615 - +0.5

Or see this region's nucleotide sequence