Strain Fitness in Sinorhizobium meliloti 1021 around SMc00585

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00584 and SMc00585 are separated by 313 nucleotidesSMc00585 and SMc00586 are separated by 19 nucleotidesSMc00586 and SMc05005 are separated by 226 nucleotides SMc00584: SMc00584 - hypothetical protein, at 1,254,682 to 1,255,854 SMc00584 SMc00585: SMc00585 - leucyl aminopeptidase, at 1,256,168 to 1,257,661 SMc00585 SMc00586: SMc00586 - DNA polymerase III subunit chi, at 1,257,681 to 1,258,130 SMc00586 SMc05005: SMc05005 - transposase, at 1,258,357 to 1,259,349 SMc05005 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -1 0 1 2 3at 1255.937 kb on - strandat 1255.937 kb on - strandat 1255.989 kb on - strandat 1255.989 kb on - strandat 1255.989 kb on - strandat 1255.991 kb on - strandat 1256.020 kb on - strandat 1256.020 kb on - strandat 1256.125 kb on + strandat 1256.567 kb on + strand, within SMc00585at 1256.582 kb on + strand, within SMc00585at 1256.680 kb on + strand, within SMc00585at 1256.680 kb on + strand, within SMc00585at 1256.748 kb on + strand, within SMc00585at 1257.025 kb on + strand, within SMc00585at 1257.256 kb on + strand, within SMc00585at 1257.256 kb on + strand, within SMc00585at 1257.323 kb on + strand, within SMc00585at 1257.425 kb on + strand, within SMc00585at 1257.425 kb on + strand, within SMc00585at 1257.650 kb on + strandat 1258.278 kb on - strandat 1258.394 kb on + strandat 1258.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,255,937 - +3.7
1,255,937 - -0.2
1,255,989 - -1.0
1,255,989 - -0.9
1,255,989 - +0.5
1,255,991 - +0.4
1,256,020 - -0.0
1,256,020 - +0.5
1,256,125 + -0.4
1,256,567 + SMc00585 0.27 +0.4
1,256,582 + SMc00585 0.28 +1.1
1,256,680 + SMc00585 0.34 +0.3
1,256,680 + SMc00585 0.34 +0.6
1,256,748 + SMc00585 0.39 +0.9
1,257,025 + SMc00585 0.57 -0.3
1,257,256 + SMc00585 0.73 +0.2
1,257,256 + SMc00585 0.73 -0.1
1,257,323 + SMc00585 0.77 +0.1
1,257,425 + SMc00585 0.84 +0.7
1,257,425 + SMc00585 0.84 -0.4
1,257,650 + +0.3
1,258,278 - +0.9
1,258,394 + -0.8
1,258,400 + -0.6

Or see this region's nucleotide sequence