Strain Fitness in Sinorhizobium meliloti 1021 around SMc00463

Experiment: Gly-DL-Asp (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00548 and SMc00465 are separated by 39 nucleotidesSMc00465 and SMc00463 overlap by 14 nucleotidesSMc00463 and SMc00462 are separated by 14 nucleotides SMc00548: SMc00548 - signal peptide protein, at 1,960,331 to 1,960,882 SMc00548 SMc00465: SMc00465 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, at 1,960,922 to 1,961,446 SMc00465 SMc00463: SMc00463 - dihydroneopterin aldolase DHNA lyase folate biosynthesis protein, at 1,961,433 to 1,961,804 SMc00463 SMc00462: SMc00462 - dihydropteroate synthase antibiotic resistance transferase folate protein, at 1,961,819 to 1,962,670 SMc00462 Position (kb) 1961 1962Strain fitness (log2 ratio) -1 0 1at 1960.880 kb on + strandat 1960.923 kb on + strandat 1960.923 kb on + strandat 1961.843 kb on - strandat 1961.843 kb on - strandat 1961.843 kb on - strandat 1962.664 kb on - strandat 1962.765 kb on - strandat 1962.768 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
remove
1,960,880 + +0.5
1,960,923 + -0.4
1,960,923 + +1.0
1,961,843 - -0.9
1,961,843 - -0.5
1,961,843 - -1.4
1,962,664 - -1.1
1,962,765 - -1.1
1,962,768 - +0.3

Or see this region's nucleotide sequence