Strain Fitness in Sinorhizobium meliloti 1021 around SMc00302

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00300 and SMc00301 are separated by 213 nucleotidesSMc00301 and SMc00302 are separated by 95 nucleotidesSMc00302 and SMc00533 are separated by 10 nucleotides SMc00300: SMc00300 - soluble pyridine nucleotide transhydrogenase, at 1,872,516 to 1,873,919 SMc00300 SMc00301: SMc00301 - hypothetical protein, at 1,874,133 to 1,874,525 SMc00301 SMc00302: SMc00302 - hypothetical protein, at 1,874,621 to 1,875,001 SMc00302 SMc00533: SMc00533 - pyridoxal-phosphate-dependent aminotransferase, at 1,875,012 to 1,876,256 SMc00533 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1873.746 kb on - strand, within SMc00300at 1873.746 kb on - strand, within SMc00300at 1873.746 kb on - strand, within SMc00300at 1873.843 kb on - strandat 1873.863 kb on + strandat 1873.863 kb on + strandat 1873.863 kb on + strandat 1873.864 kb on - strandat 1873.864 kb on - strandat 1873.930 kb on - strandat 1873.938 kb on - strandat 1874.033 kb on - strandat 1874.069 kb on - strandat 1874.512 kb on - strandat 1874.525 kb on + strandat 1874.544 kb on - strandat 1874.583 kb on + strandat 1874.583 kb on + strandat 1874.583 kb on + strandat 1874.584 kb on - strandat 1874.584 kb on - strandat 1874.835 kb on + strand, within SMc00302at 1874.836 kb on - strand, within SMc00302

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,873,746 - SMc00300 0.88 -0.0
1,873,746 - SMc00300 0.88 -0.7
1,873,746 - SMc00300 0.88 +0.0
1,873,843 - +0.0
1,873,863 + -1.7
1,873,863 + -0.2
1,873,863 + +0.4
1,873,864 - +0.2
1,873,864 - +0.7
1,873,930 - +0.3
1,873,938 - +0.4
1,874,033 - +0.7
1,874,069 - +0.3
1,874,512 - +2.2
1,874,525 + +0.4
1,874,544 - -0.9
1,874,583 + +0.2
1,874,583 + +0.3
1,874,583 + +2.4
1,874,584 - -0.8
1,874,584 - +0.2
1,874,835 + SMc00302 0.56 -3.9
1,874,836 - SMc00302 0.56 -3.3

Or see this region's nucleotide sequence