Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1666 and SMa1667 are separated by 289 nucleotides SMa1667 and SMa1668 are separated by 419 nucleotides
SMa1666: SMa1666 - hypothetical protein, at 932,526 to 933,005
SMa1666
SMa1667: SMa1667 - ArcD1 arginine/ornithine antiporter, at 933,295 to 934,722
SMa1667
SMa1668: SMa1668 - ArcD2 arginine/ornithine antiporter, at 935,142 to 936,563
SMa1668
Position (kb) 933
934
935 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 932.333 kb on + strand at 932.334 kb on - strand at 932.334 kb on - strand at 932.334 kb on - strand at 932.370 kb on - strand at 932.382 kb on + strand at 932.383 kb on - strand at 932.383 kb on - strand at 932.747 kb on + strand, within SMa1666 at 932.811 kb on + strand, within SMa1666 at 932.811 kb on + strand, within SMa1666 at 932.812 kb on - strand, within SMa1666 at 932.812 kb on - strand, within SMa1666 at 932.988 kb on + strand at 932.989 kb on - strand at 933.102 kb on + strand at 933.103 kb on - strand at 933.154 kb on + strand at 933.154 kb on + strand at 933.155 kb on - strand at 933.231 kb on + strand at 933.248 kb on + strand at 933.249 kb on - strand at 933.574 kb on + strand, within SMa1667 at 933.607 kb on + strand, within SMa1667 at 933.607 kb on + strand, within SMa1667 at 933.791 kb on + strand, within SMa1667 at 933.791 kb on + strand, within SMa1667 at 933.792 kb on - strand, within SMa1667 at 933.800 kb on + strand, within SMa1667 at 933.801 kb on - strand, within SMa1667 at 933.893 kb on + strand, within SMa1667 at 933.935 kb on + strand, within SMa1667 at 934.034 kb on + strand, within SMa1667 at 934.038 kb on - strand, within SMa1667 at 934.052 kb on - strand, within SMa1667 at 934.253 kb on + strand, within SMa1667 at 934.253 kb on + strand, within SMa1667 at 934.402 kb on + strand, within SMa1667 at 934.403 kb on - strand, within SMa1667 at 934.403 kb on - strand, within SMa1667 at 934.410 kb on - strand, within SMa1667 at 934.454 kb on - strand, within SMa1667 at 934.514 kb on - strand, within SMa1667 at 934.524 kb on + strand, within SMa1667 at 934.524 kb on + strand, within SMa1667 at 934.574 kb on - strand, within SMa1667 at 934.574 kb on - strand, within SMa1667 at 934.659 kb on - strand at 934.690 kb on + strand at 934.691 kb on - strand at 934.716 kb on + strand at 934.717 kb on - strand at 934.718 kb on + strand at 934.719 kb on - strand at 934.720 kb on + strand at 934.720 kb on + strand at 934.721 kb on - strand at 935.010 kb on - strand at 935.010 kb on - strand at 935.292 kb on + strand, within SMa1668 at 935.292 kb on + strand, within SMa1668 at 935.293 kb on - strand, within SMa1668 at 935.293 kb on - strand, within SMa1668 at 935.361 kb on + strand, within SMa1668 at 935.399 kb on - strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.446 kb on - strand, within SMa1668 at 935.446 kb on - strand, within SMa1668
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 932,333 + +0.3 932,334 - +0.3 932,334 - +0.6 932,334 - -0.3 932,370 - +2.3 932,382 + -0.1 932,383 - +0.1 932,383 - +1.7 932,747 + SMa1666 0.46 -0.1 932,811 + SMa1666 0.59 +1.7 932,811 + SMa1666 0.59 +0.4 932,812 - SMa1666 0.60 -0.1 932,812 - SMa1666 0.60 -0.7 932,988 + +0.9 932,989 - -0.1 933,102 + -0.8 933,103 - -1.0 933,154 + -0.0 933,154 + -1.0 933,155 - +2.0 933,231 + +0.3 933,248 + +1.0 933,249 - -0.5 933,574 + SMa1667 0.20 +0.7 933,607 + SMa1667 0.22 +2.0 933,607 + SMa1667 0.22 +1.5 933,791 + SMa1667 0.35 -0.2 933,791 + SMa1667 0.35 +0.4 933,792 - SMa1667 0.35 -0.5 933,800 + SMa1667 0.35 +0.1 933,801 - SMa1667 0.35 +0.3 933,893 + SMa1667 0.42 +0.5 933,935 + SMa1667 0.45 +0.4 934,034 + SMa1667 0.52 -2.7 934,038 - SMa1667 0.52 +0.1 934,052 - SMa1667 0.53 +0.6 934,253 + SMa1667 0.67 +1.2 934,253 + SMa1667 0.67 -0.9 934,402 + SMa1667 0.78 -0.2 934,403 - SMa1667 0.78 +0.1 934,403 - SMa1667 0.78 -0.6 934,410 - SMa1667 0.78 +1.7 934,454 - SMa1667 0.81 -0.9 934,514 - SMa1667 0.85 -0.3 934,524 + SMa1667 0.86 -0.3 934,524 + SMa1667 0.86 +0.4 934,574 - SMa1667 0.90 +0.9 934,574 - SMa1667 0.90 +1.7 934,659 - -0.1 934,690 + +3.7 934,691 - -0.3 934,716 + -2.0 934,717 - +3.3 934,718 + +0.3 934,719 - -0.6 934,720 + -0.9 934,720 + -0.8 934,721 - -0.2 935,010 - +0.4 935,010 - +0.6 935,292 + SMa1668 0.11 -1.5 935,292 + SMa1668 0.11 -0.0 935,293 - SMa1668 0.11 +0.2 935,293 - SMa1668 0.11 -0.1 935,361 + SMa1668 0.15 -0.1 935,399 - SMa1668 0.18 +1.7 935,445 + SMa1668 0.21 -1.0 935,445 + SMa1668 0.21 -0.5 935,445 + SMa1668 0.21 +0.1 935,446 - SMa1668 0.21 -0.2 935,446 - SMa1668 0.21 -0.3
Or see this region's nucleotide sequence