Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1473 and SMa1476 are separated by 91 nucleotides SMa1476 and SMa1478 are separated by 43 nucleotides
SMa1473: SMa1473 - aminopeptidase, at 809,859 to 811,163
SMa1473
SMa1476: SMa1476 - AraC family transcriptional regulator, at 811,255 to 812,211
SMa1476
SMa1478: SMa1478 - methyltransferase, at 812,255 to 813,790
SMa1478
Position (kb) 811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 810.295 kb on + strand, within SMa1473 at 810.300 kb on + strand, within SMa1473 at 810.314 kb on + strand, within SMa1473 at 810.321 kb on - strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.452 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.799 kb on - strand, within SMa1473 at 810.826 kb on + strand, within SMa1473 at 810.827 kb on - strand, within SMa1473 at 810.880 kb on + strand, within SMa1473 at 810.881 kb on - strand, within SMa1473 at 810.935 kb on - strand, within SMa1473 at 810.944 kb on + strand, within SMa1473 at 810.945 kb on - strand, within SMa1473 at 811.149 kb on + strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.256 kb on + strand at 811.463 kb on + strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.719 kb on - strand, within SMa1476 at 811.799 kb on + strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 812.127 kb on - strand at 812.238 kb on + strand at 812.239 kb on - strand at 812.454 kb on + strand, within SMa1478 at 812.454 kb on + strand, within SMa1478 at 812.455 kb on - strand, within SMa1478 at 812.622 kb on + strand, within SMa1478 at 812.622 kb on + strand, within SMa1478 at 812.623 kb on - strand at 812.623 kb on - strand, within SMa1478 at 812.664 kb on + strand, within SMa1478 at 812.718 kb on + strand, within SMa1478 at 812.781 kb on + strand, within SMa1478 at 812.782 kb on - strand, within SMa1478 at 812.807 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 810,295 + SMa1473 0.33 -1.4 810,300 + SMa1473 0.34 +0.3 810,314 + SMa1473 0.35 -1.4 810,321 - SMa1473 0.35 +1.5 810,451 + SMa1473 0.45 +0.1 810,451 + SMa1473 0.45 +0.3 810,451 + SMa1473 0.45 +2.3 810,451 + SMa1473 0.45 -1.9 810,452 - SMa1473 0.45 -0.1 810,541 - SMa1473 0.52 +1.3 810,541 - SMa1473 0.52 +0.5 810,546 + SMa1473 0.53 -0.5 810,546 + SMa1473 0.53 -0.5 810,798 + SMa1473 0.72 -0.6 810,798 + SMa1473 0.72 -0.7 810,799 - SMa1473 0.72 -0.1 810,826 + SMa1473 0.74 +0.4 810,827 - SMa1473 0.74 -0.3 810,880 + SMa1473 0.78 +0.4 810,881 - SMa1473 0.78 -1.3 810,935 - SMa1473 0.82 +0.3 810,944 + SMa1473 0.83 +0.1 810,945 - SMa1473 0.83 -1.9 811,149 + +0.2 811,232 - +0.8 811,232 - -0.5 811,232 - +0.9 811,256 + +0.2 811,463 + SMa1476 0.22 -1.0 811,464 - SMa1476 0.22 -1.5 811,464 - SMa1476 0.22 -0.9 811,464 - SMa1476 0.22 -1.2 811,464 - SMa1476 0.22 -0.3 811,718 + SMa1476 0.48 -0.0 811,718 + SMa1476 0.48 +0.3 811,719 - SMa1476 0.48 +0.4 811,799 + SMa1476 0.57 -1.3 811,800 - SMa1476 0.57 -1.8 811,800 - SMa1476 0.57 +0.7 811,800 - SMa1476 0.57 -0.6 811,800 - SMa1476 0.57 +0.3 812,127 - -0.7 812,238 + +1.7 812,239 - -0.2 812,454 + SMa1478 0.13 -0.0 812,454 + SMa1478 0.13 -0.0 812,455 - SMa1478 0.13 -1.2 812,622 + SMa1478 0.24 -0.9 812,622 + SMa1478 0.24 -0.2 812,623 - +0.1 812,623 - SMa1478 0.24 -1.1 812,664 + SMa1478 0.27 -1.4 812,718 + SMa1478 0.30 +0.8 812,781 + SMa1478 0.34 -0.0 812,782 - SMa1478 0.34 +1.6 812,807 - SMa1478 0.36 -0.1 812,887 - SMa1478 0.41 -0.6 812,887 - SMa1478 0.41 +0.8 812,887 - SMa1478 0.41 +3.6 812,887 - SMa1478 0.41 -0.0
Or see this region's nucleotide sequence