Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1328 and SMa1329 are separated by 588 nucleotides SMa1329 and SMa1331 are separated by 34 nucleotides SMa1331 and SMa1332 are separated by 29 nucleotides
SMa1328: SMa1328 - MtbA protein, at 724,533 to 725,855
SMa1328
SMa1329: SMa1329 - Peptidase, at 726,444 to 727,706
SMa1329
SMa1331: SMa1331 - hypothetical protein, at 727,741 to 728,154
SMa1331
SMa1332: SMa1332 - hypothetical protein, at 728,184 to 729,026
SMa1332
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 725.446 kb on + strand, within SMa1328 at 725.542 kb on + strand, within SMa1328 at 725.553 kb on + strand, within SMa1328 at 725.553 kb on + strand, within SMa1328 at 725.594 kb on + strand, within SMa1328 at 725.594 kb on + strand, within SMa1328 at 725.595 kb on - strand, within SMa1328 at 725.608 kb on + strand, within SMa1328 at 725.999 kb on - strand at 726.145 kb on + strand at 726.146 kb on - strand at 726.252 kb on + strand at 726.283 kb on - strand at 726.332 kb on - strand at 726.406 kb on + strand at 726.406 kb on + strand at 726.407 kb on - strand at 726.459 kb on + strand at 726.459 kb on + strand at 726.462 kb on + strand at 726.463 kb on - strand at 726.463 kb on - strand at 726.660 kb on + strand, within SMa1329 at 726.661 kb on - strand, within SMa1329 at 726.694 kb on + strand, within SMa1329 at 726.889 kb on - strand, within SMa1329 at 726.950 kb on + strand, within SMa1329 at 726.951 kb on - strand, within SMa1329 at 726.952 kb on + strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.953 kb on - strand, within SMa1329 at 726.962 kb on - strand, within SMa1329 at 727.034 kb on + strand, within SMa1329 at 727.035 kb on - strand, within SMa1329 at 727.406 kb on + strand, within SMa1329 at 727.471 kb on + strand, within SMa1329 at 727.471 kb on + strand, within SMa1329 at 727.471 kb on + strand, within SMa1329 at 727.700 kb on + strand at 727.700 kb on + strand at 727.701 kb on - strand at 727.811 kb on + strand, within SMa1331 at 727.812 kb on - strand, within SMa1331 at 727.812 kb on - strand, within SMa1331 at 727.812 kb on - strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.880 kb on + strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 727.881 kb on - strand, within SMa1331 at 728.004 kb on + strand, within SMa1331 at 728.005 kb on - strand, within SMa1331 at 728.195 kb on + strand at 728.195 kb on + strand at 728.315 kb on - strand, within SMa1332 at 728.315 kb on - strand, within SMa1332 at 728.469 kb on - strand, within SMa1332 at 728.478 kb on - strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.543 kb on - strand, within SMa1332 at 728.587 kb on + strand, within SMa1332 at 728.602 kb on + strand, within SMa1332 at 728.603 kb on - strand, within SMa1332
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 725,446 + SMa1328 0.69 -0.0 725,542 + SMa1328 0.76 -0.3 725,553 + SMa1328 0.77 +0.1 725,553 + SMa1328 0.77 -1.3 725,594 + SMa1328 0.80 -0.4 725,594 + SMa1328 0.80 -0.4 725,595 - SMa1328 0.80 +0.7 725,608 + SMa1328 0.81 +3.9 725,999 - +0.3 726,145 + -0.7 726,146 - -0.9 726,252 + +0.0 726,283 - -0.0 726,332 - -0.9 726,406 + -0.4 726,406 + -3.0 726,407 - -0.7 726,459 + +1.4 726,459 + +0.3 726,462 + +0.1 726,463 - -1.8 726,463 - +1.9 726,660 + SMa1329 0.17 +0.4 726,661 - SMa1329 0.17 -0.4 726,694 + SMa1329 0.20 -0.2 726,889 - SMa1329 0.35 +0.0 726,950 + SMa1329 0.40 -0.0 726,951 - SMa1329 0.40 +0.0 726,952 + SMa1329 0.40 -1.8 726,953 - SMa1329 0.40 -0.7 726,953 - SMa1329 0.40 -0.5 726,953 - SMa1329 0.40 -0.4 726,953 - SMa1329 0.40 -0.2 726,953 - SMa1329 0.40 -0.2 726,953 - SMa1329 0.40 -1.0 726,962 - SMa1329 0.41 -0.8 727,034 + SMa1329 0.47 +0.2 727,035 - SMa1329 0.47 -1.4 727,406 + SMa1329 0.76 -0.0 727,471 + SMa1329 0.81 -0.1 727,471 + SMa1329 0.81 -0.1 727,471 + SMa1329 0.81 -0.3 727,700 + +0.2 727,700 + -0.2 727,701 - -0.5 727,811 + SMa1331 0.17 -0.3 727,812 - SMa1331 0.17 +0.4 727,812 - SMa1331 0.17 +0.7 727,812 - SMa1331 0.17 -0.5 727,880 + SMa1331 0.34 +0.4 727,880 + SMa1331 0.34 +0.4 727,880 + SMa1331 0.34 -0.4 727,880 + SMa1331 0.34 -0.1 727,880 + SMa1331 0.34 +1.5 727,880 + SMa1331 0.34 -1.7 727,880 + SMa1331 0.34 -0.6 727,880 + SMa1331 0.34 +0.9 727,880 + SMa1331 0.34 -0.1 727,880 + SMa1331 0.34 +0.7 727,881 - SMa1331 0.34 -1.8 727,881 - SMa1331 0.34 +4.7 727,881 - SMa1331 0.34 -2.6 727,881 - SMa1331 0.34 +0.1 727,881 - SMa1331 0.34 +0.0 727,881 - SMa1331 0.34 -0.1 728,004 + SMa1331 0.64 -0.2 728,005 - SMa1331 0.64 -0.3 728,195 + -0.4 728,195 + -0.5 728,315 - SMa1332 0.16 -0.1 728,315 - SMa1332 0.16 +0.4 728,469 - SMa1332 0.34 -0.1 728,478 - SMa1332 0.35 -0.1 728,542 + SMa1332 0.42 +0.6 728,542 + SMa1332 0.42 +0.4 728,542 + SMa1332 0.42 +0.2 728,543 - SMa1332 0.43 -0.3 728,587 + SMa1332 0.48 -2.0 728,602 + SMa1332 0.50 +1.9 728,603 - SMa1332 0.50 -0.6
Or see this region's nucleotide sequence