Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0091 and SMa0093 are separated by 261 nucleotides SMa0093 and SMa0095 are separated by 50 nucleotides
SMa0091: SMa0091 - hypothetical protein, at 47,225 to 47,920
SMa0091
SMa0093: SMa0093 - Branched-chain amino acid aminotransferase, at 48,182 to 49,033
SMa0093
SMa0095: SMa0095 - D-aminopeptidase, at 49,084 to 50,121
SMa0095
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 47.223 kb on - strand at 47.625 kb on - strand, within SMa0091 at 47.646 kb on - strand, within SMa0091 at 47.687 kb on + strand, within SMa0091 at 47.688 kb on - strand, within SMa0091 at 47.688 kb on - strand, within SMa0091 at 47.740 kb on + strand, within SMa0091 at 47.784 kb on - strand, within SMa0091 at 47.834 kb on + strand, within SMa0091 at 47.834 kb on + strand, within SMa0091 at 47.879 kb on + strand at 47.880 kb on - strand at 47.889 kb on - strand at 47.993 kb on + strand at 47.993 kb on + strand at 48.039 kb on + strand at 48.040 kb on - strand at 48.040 kb on - strand at 48.197 kb on + strand at 48.197 kb on + strand at 48.278 kb on + strand, within SMa0093 at 48.279 kb on - strand, within SMa0093 at 48.279 kb on - strand, within SMa0093 at 48.450 kb on - strand, within SMa0093 at 48.767 kb on - strand, within SMa0093 at 49.005 kb on - strand at 49.032 kb on - strand at 49.281 kb on + strand, within SMa0095 at 50.007 kb on + strand, within SMa0095 at 50.008 kb on - strand, within SMa0095
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 47,223 - +0.7 47,625 - SMa0091 0.57 +0.6 47,646 - SMa0091 0.60 -2.4 47,687 + SMa0091 0.66 -1.3 47,688 - SMa0091 0.67 -0.1 47,688 - SMa0091 0.67 +2.0 47,740 + SMa0091 0.74 -2.5 47,784 - SMa0091 0.80 +0.1 47,834 + SMa0091 0.88 -0.1 47,834 + SMa0091 0.88 -1.3 47,879 + -0.9 47,880 - -0.3 47,889 - +1.2 47,993 + -0.3 47,993 + -1.0 48,039 + +3.3 48,040 - -0.4 48,040 - -0.7 48,197 + -2.5 48,197 + -0.3 48,278 + SMa0093 0.11 -2.3 48,279 - SMa0093 0.11 -1.6 48,279 - SMa0093 0.11 -1.8 48,450 - SMa0093 0.31 +0.6 48,767 - SMa0093 0.69 -2.9 49,005 - +1.0 49,032 - +0.9 49,281 + SMa0095 0.19 -2.1 50,007 + SMa0095 0.89 -0.4 50,008 - SMa0095 0.89 -0.8
Or see this region's nucleotide sequence