Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21706

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20634 and SM_b21706 are separated by 52 nucleotidesSM_b21706 and SM_b20636 are separated by 455 nucleotides SM_b20634: SM_b20634 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,653,927 to 1,655,162 _b20634 SM_b21706: SM_b21706 - LacI family transcriptional regulator, at 1,655,215 to 1,656,018 _b21706 SM_b20636: SM_b20636 - transposase of insertion sequence ISRm19 protein, at 1,656,474 to 1,657,487 _b20636 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -2 -1 0 1 2at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.216 kb on + strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.369 kb on - strand, within SM_b20634at 1654.517 kb on + strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.636 kb on + strand, within SM_b20634at 1654.733 kb on - strand, within SM_b20634at 1654.786 kb on + strand, within SM_b20634at 1654.787 kb on - strand, within SM_b20634at 1654.787 kb on - strand, within SM_b20634at 1654.787 kb on - strand, within SM_b20634at 1654.787 kb on - strand, within SM_b20634at 1654.801 kb on + strand, within SM_b20634at 1654.843 kb on + strand, within SM_b20634at 1654.844 kb on - strand, within SM_b20634at 1654.967 kb on - strand, within SM_b20634at 1654.967 kb on - strand, within SM_b20634at 1655.033 kb on - strand, within SM_b20634at 1655.783 kb on + strand, within SM_b21706at 1655.783 kb on + strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.920 kb on + strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.003 kb on - strandat 1656.003 kb on - strandat 1656.003 kb on - strandat 1656.382 kb on - strandat 1656.416 kb on + strandat 1656.417 kb on - strandat 1656.471 kb on - strandat 1656.471 kb on - strandat 1656.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,654,215 - SM_b20634 0.23 +0.2
1,654,215 - SM_b20634 0.23 -0.9
1,654,215 - SM_b20634 0.23 -0.1
1,654,215 - SM_b20634 0.23 -0.1
1,654,215 - SM_b20634 0.23 -0.4
1,654,216 + SM_b20634 0.23 -1.8
1,654,217 - SM_b20634 0.23 +2.0
1,654,217 - SM_b20634 0.23 -0.1
1,654,217 - SM_b20634 0.23 -0.3
1,654,369 - SM_b20634 0.36 -0.0
1,654,517 + SM_b20634 0.48 -0.7
1,654,628 - SM_b20634 0.57 -1.8
1,654,628 - SM_b20634 0.57 +0.6
1,654,628 - SM_b20634 0.57 -0.3
1,654,636 + SM_b20634 0.57 +0.4
1,654,733 - SM_b20634 0.65 -0.1
1,654,786 + SM_b20634 0.69 -1.5
1,654,787 - SM_b20634 0.70 +0.2
1,654,787 - SM_b20634 0.70 +1.4
1,654,787 - SM_b20634 0.70 -1.0
1,654,787 - SM_b20634 0.70 +0.4
1,654,801 + SM_b20634 0.71 -0.4
1,654,843 + SM_b20634 0.74 +0.3
1,654,844 - SM_b20634 0.74 +0.7
1,654,967 - SM_b20634 0.84 -2.1
1,654,967 - SM_b20634 0.84 +0.7
1,655,033 - SM_b20634 0.89 -2.7
1,655,783 + SM_b21706 0.71 -0.3
1,655,783 + SM_b21706 0.71 -0.3
1,655,784 - SM_b21706 0.71 -0.7
1,655,784 - SM_b21706 0.71 +0.0
1,655,784 - SM_b21706 0.71 +0.1
1,655,920 + SM_b21706 0.88 -2.5
1,655,921 - SM_b21706 0.88 -0.5
1,655,921 - SM_b21706 0.88 +0.1
1,655,921 - SM_b21706 0.88 -0.3
1,656,002 + -1.6
1,656,002 + +0.5
1,656,002 + -0.1
1,656,002 + -1.6
1,656,003 - +0.6
1,656,003 - -0.5
1,656,003 - +0.9
1,656,382 - +0.2
1,656,416 + -0.3
1,656,417 - +0.1
1,656,471 - -0.6
1,656,471 - -0.1
1,656,476 - +2.4

Or see this region's nucleotide sequence