Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21671

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21539 and SM_b21671 are separated by 6 nucleotidesSM_b21671 and SM_b21540 are separated by 222 nucleotides SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732 _b21539 SM_b21671: SM_b21671 - hypothetical protein, at 1,069,739 to 1,070,227 _b21671 SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472 _b21540 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -3 -2 -1 0 1at 1068.867 kb on - strand, within SM_b21539at 1069.542 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.662 kb on - strandat 1069.750 kb on + strandat 1069.753 kb on + strandat 1069.753 kb on + strandat 1069.754 kb on - strandat 1069.754 kb on - strandat 1069.769 kb on + strandat 1069.769 kb on + strandat 1070.008 kb on - strand, within SM_b21671at 1070.023 kb on - strand, within SM_b21671at 1070.094 kb on + strand, within SM_b21671at 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.218 kb on + strandat 1070.218 kb on + strandat 1070.219 kb on - strandat 1070.219 kb on - strandat 1070.225 kb on + strandat 1070.234 kb on - strandat 1070.236 kb on + strandat 1070.446 kb on + strandat 1070.447 kb on - strandat 1070.447 kb on - strandat 1070.538 kb on - strandat 1070.538 kb on - strandat 1070.570 kb on + strand, within SM_b21540at 1070.571 kb on - strand, within SM_b21540at 1070.764 kb on - strand, within SM_b21540at 1070.764 kb on - strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.846 kb on + strand, within SM_b21540at 1070.851 kb on + strand, within SM_b21540at 1071.053 kb on + strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.056 kb on - strand, within SM_b21540at 1071.056 kb on - strand, within SM_b21540at 1071.115 kb on - strand, within SM_b21540at 1071.167 kb on - strand, within SM_b21540

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,068,867 - SM_b21539 0.41 +0.9
1,069,542 - SM_b21539 0.87 -1.5
1,069,560 - SM_b21539 0.88 -0.5
1,069,560 - SM_b21539 0.88 -1.0
1,069,662 - -1.0
1,069,750 + -0.5
1,069,753 + -0.8
1,069,753 + -0.0
1,069,754 - +0.0
1,069,754 - +0.1
1,069,769 + -0.2
1,069,769 + -0.4
1,070,008 - SM_b21671 0.55 +0.3
1,070,023 - SM_b21671 0.58 +0.4
1,070,094 + SM_b21671 0.73 +0.8
1,070,216 + +1.7
1,070,216 + -1.0
1,070,216 + +1.2
1,070,216 + -0.3
1,070,217 - +0.2
1,070,217 - -0.6
1,070,217 - +0.3
1,070,217 - -0.6
1,070,217 - -2.6
1,070,217 - +0.9
1,070,218 + -1.5
1,070,218 + +0.8
1,070,219 - +0.6
1,070,219 - -0.5
1,070,225 + +0.0
1,070,234 - +0.9
1,070,236 + -2.8
1,070,446 + +0.3
1,070,447 - -0.0
1,070,447 - -0.1
1,070,538 - -1.0
1,070,538 - -2.2
1,070,570 + SM_b21540 0.12 +0.1
1,070,571 - SM_b21540 0.12 +0.5
1,070,764 - SM_b21540 0.31 +1.5
1,070,764 - SM_b21540 0.31 -0.7
1,070,828 + SM_b21540 0.37 -0.3
1,070,828 + SM_b21540 0.37 -0.4
1,070,828 + SM_b21540 0.37 +0.7
1,070,828 + SM_b21540 0.37 +0.4
1,070,829 - SM_b21540 0.37 -1.1
1,070,829 - SM_b21540 0.37 -0.7
1,070,829 - SM_b21540 0.37 +0.2
1,070,829 - SM_b21540 0.37 +0.4
1,070,829 - SM_b21540 0.37 -1.2
1,070,829 - SM_b21540 0.37 -1.0
1,070,846 + SM_b21540 0.39 -2.1
1,070,851 + SM_b21540 0.39 +0.7
1,071,053 + SM_b21540 0.59 -0.9
1,071,054 - SM_b21540 0.59 +0.1
1,071,054 - SM_b21540 0.59 -0.4
1,071,054 - SM_b21540 0.59 +0.1
1,071,055 + SM_b21540 0.59 +0.2
1,071,055 + SM_b21540 0.59 -0.5
1,071,055 + SM_b21540 0.59 +0.1
1,071,055 + SM_b21540 0.59 +0.2
1,071,055 + SM_b21540 0.59 +0.9
1,071,056 - SM_b21540 0.59 +0.3
1,071,056 - SM_b21540 0.59 +0.3
1,071,115 - SM_b21540 0.65 -0.5
1,071,167 - SM_b21540 0.70 +0.3

Or see this region's nucleotide sequence