Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21539 and SM_b21671 are separated by 6 nucleotides SM_b21671 and SM_b21540 are separated by 222 nucleotides
SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732
_b21539
SM_b21671: SM_b21671 - hypothetical protein, at 1,069,739 to 1,070,227
_b21671
SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472
_b21540
Position (kb)
1069
1070
1071 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1068.867 kb on - strand, within SM_b21539 at 1069.542 kb on - strand, within SM_b21539 at 1069.560 kb on - strand, within SM_b21539 at 1069.560 kb on - strand, within SM_b21539 at 1069.662 kb on - strand at 1069.750 kb on + strand at 1069.753 kb on + strand at 1069.753 kb on + strand at 1069.754 kb on - strand at 1069.754 kb on - strand at 1069.769 kb on + strand at 1069.769 kb on + strand at 1070.008 kb on - strand, within SM_b21671 at 1070.023 kb on - strand, within SM_b21671 at 1070.094 kb on + strand, within SM_b21671 at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.218 kb on + strand at 1070.218 kb on + strand at 1070.219 kb on - strand at 1070.219 kb on - strand at 1070.225 kb on + strand at 1070.234 kb on - strand at 1070.236 kb on + strand at 1070.446 kb on + strand at 1070.447 kb on - strand at 1070.447 kb on - strand at 1070.538 kb on - strand at 1070.538 kb on - strand at 1070.570 kb on + strand, within SM_b21540 at 1070.571 kb on - strand, within SM_b21540 at 1070.764 kb on - strand, within SM_b21540 at 1070.764 kb on - strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.846 kb on + strand, within SM_b21540 at 1070.851 kb on + strand, within SM_b21540 at 1071.053 kb on + strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.056 kb on - strand, within SM_b21540 at 1071.056 kb on - strand, within SM_b21540 at 1071.115 kb on - strand, within SM_b21540 at 1071.167 kb on - strand, within SM_b21540
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,068,867 - SM_b21539 0.41 +0.9 1,069,542 - SM_b21539 0.87 -1.5 1,069,560 - SM_b21539 0.88 -0.5 1,069,560 - SM_b21539 0.88 -1.0 1,069,662 - -1.0 1,069,750 + -0.5 1,069,753 + -0.8 1,069,753 + -0.0 1,069,754 - +0.0 1,069,754 - +0.1 1,069,769 + -0.2 1,069,769 + -0.4 1,070,008 - SM_b21671 0.55 +0.3 1,070,023 - SM_b21671 0.58 +0.4 1,070,094 + SM_b21671 0.73 +0.8 1,070,216 + +1.7 1,070,216 + -1.0 1,070,216 + +1.2 1,070,216 + -0.3 1,070,217 - +0.2 1,070,217 - -0.6 1,070,217 - +0.3 1,070,217 - -0.6 1,070,217 - -2.6 1,070,217 - +0.9 1,070,218 + -1.5 1,070,218 + +0.8 1,070,219 - +0.6 1,070,219 - -0.5 1,070,225 + +0.0 1,070,234 - +0.9 1,070,236 + -2.8 1,070,446 + +0.3 1,070,447 - -0.0 1,070,447 - -0.1 1,070,538 - -1.0 1,070,538 - -2.2 1,070,570 + SM_b21540 0.12 +0.1 1,070,571 - SM_b21540 0.12 +0.5 1,070,764 - SM_b21540 0.31 +1.5 1,070,764 - SM_b21540 0.31 -0.7 1,070,828 + SM_b21540 0.37 -0.3 1,070,828 + SM_b21540 0.37 -0.4 1,070,828 + SM_b21540 0.37 +0.7 1,070,828 + SM_b21540 0.37 +0.4 1,070,829 - SM_b21540 0.37 -1.1 1,070,829 - SM_b21540 0.37 -0.7 1,070,829 - SM_b21540 0.37 +0.2 1,070,829 - SM_b21540 0.37 +0.4 1,070,829 - SM_b21540 0.37 -1.2 1,070,829 - SM_b21540 0.37 -1.0 1,070,846 + SM_b21540 0.39 -2.1 1,070,851 + SM_b21540 0.39 +0.7 1,071,053 + SM_b21540 0.59 -0.9 1,071,054 - SM_b21540 0.59 +0.1 1,071,054 - SM_b21540 0.59 -0.4 1,071,054 - SM_b21540 0.59 +0.1 1,071,055 + SM_b21540 0.59 +0.2 1,071,055 + SM_b21540 0.59 -0.5 1,071,055 + SM_b21540 0.59 +0.1 1,071,055 + SM_b21540 0.59 +0.2 1,071,055 + SM_b21540 0.59 +0.9 1,071,056 - SM_b21540 0.59 +0.3 1,071,056 - SM_b21540 0.59 +0.3 1,071,115 - SM_b21540 0.65 -0.5 1,071,167 - SM_b21540 0.70 +0.3
Or see this region's nucleotide sequence