Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21370

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21369 and SM_b21370 overlap by 4 nucleotidesSM_b21370 and SM_b21371 are separated by 7 nucleotidesSM_b21371 and SM_b21372 are separated by 3 nucleotides SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641 _b21369 SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163 _b21370 SM_b21371: SM_b21371 - hypothetical protein, at 1,036,171 to 1,036,542 _b21371 SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604 _b21372 Position (kb) 1033 1034 1035 1036 1037Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1032.665 kb on - strandat 1033.146 kb on - strand, within SM_b21369at 1033.210 kb on + strandat 1033.211 kb on - strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.389 kb on - strand, within SM_b21369at 1033.389 kb on - strand, within SM_b21369at 1033.555 kb on + strandat 1033.607 kb on - strandat 1033.745 kb on + strandat 1033.745 kb on + strandat 1033.869 kb on + strandat 1033.870 kb on - strandat 1034.019 kb on + strand, within SM_b21370at 1034.019 kb on + strand, within SM_b21370at 1034.019 kb on + strand, within SM_b21370at 1034.058 kb on + strand, within SM_b21370at 1034.058 kb on + strand, within SM_b21370at 1034.091 kb on + strand, within SM_b21370at 1034.092 kb on - strand, within SM_b21370at 1034.115 kb on + strand, within SM_b21370at 1034.116 kb on - strand, within SM_b21370at 1034.116 kb on - strand, within SM_b21370at 1034.437 kb on - strand, within SM_b21370at 1034.437 kb on - strand, within SM_b21370at 1034.480 kb on - strand, within SM_b21370at 1034.512 kb on - strand, within SM_b21370at 1034.768 kb on + strand, within SM_b21370at 1034.768 kb on + strand, within SM_b21370at 1034.810 kb on - strand, within SM_b21370at 1034.820 kb on + strand, within SM_b21370at 1034.821 kb on - strand, within SM_b21370at 1034.821 kb on - strand, within SM_b21370at 1034.821 kb on - strand, within SM_b21370at 1034.821 kb on - strand, within SM_b21370at 1034.821 kb on - strand, within SM_b21370at 1034.844 kb on + strand, within SM_b21370at 1034.845 kb on - strand, within SM_b21370at 1034.845 kb on - strand, within SM_b21370at 1034.889 kb on + strandat 1035.090 kb on + strand, within SM_b21370at 1035.090 kb on + strand, within SM_b21370at 1035.090 kb on + strand, within SM_b21370at 1035.090 kb on + strand, within SM_b21370at 1035.090 kb on + strand, within SM_b21370at 1035.091 kb on - strand, within SM_b21370at 1035.091 kb on - strand, within SM_b21370at 1035.091 kb on - strand, within SM_b21370at 1035.214 kb on - strand, within SM_b21370at 1035.239 kb on + strand, within SM_b21370at 1035.286 kb on + strand, within SM_b21370at 1035.287 kb on - strand, within SM_b21370at 1035.304 kb on - strand, within SM_b21370at 1035.304 kb on - strand, within SM_b21370at 1035.304 kb on - strand, within SM_b21370at 1035.372 kb on + strand, within SM_b21370at 1035.372 kb on + strand, within SM_b21370at 1035.373 kb on - strand, within SM_b21370at 1035.509 kb on - strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.588 kb on - strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.655 kb on - strand, within SM_b21370at 1035.663 kb on + strand, within SM_b21370at 1035.663 kb on + strand, within SM_b21370at 1035.676 kb on - strand, within SM_b21370at 1035.676 kb on - strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.946 kb on - strandat 1035.960 kb on + strandat 1036.080 kb on + strandat 1036.080 kb on + strandat 1036.081 kb on - strandat 1036.081 kb on - strandat 1036.081 kb on - strandat 1036.092 kb on + strandat 1036.092 kb on + strandat 1036.092 kb on + strandat 1036.098 kb on + strandat 1036.098 kb on + strandat 1036.099 kb on - strandat 1036.264 kb on + strand, within SM_b21371at 1036.264 kb on + strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.266 kb on + strand, within SM_b21371at 1036.267 kb on - strand, within SM_b21371at 1036.679 kb on + strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.716 kb on - strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.983 kb on - strand, within SM_b21372at 1037.033 kb on + strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.142 kb on - strand, within SM_b21372

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,032,665 - +0.9
1,033,146 - SM_b21369 0.54 +0.3
1,033,210 + +2.1
1,033,211 - SM_b21369 0.60 +0.3
1,033,348 + SM_b21369 0.73 +1.8
1,033,348 + SM_b21369 0.73 +1.4
1,033,348 + SM_b21369 0.73 -0.8
1,033,348 + SM_b21369 0.73 -0.1
1,033,349 - SM_b21369 0.73 -0.3
1,033,349 - SM_b21369 0.73 -0.4
1,033,349 - SM_b21369 0.73 -0.0
1,033,349 - SM_b21369 0.73 -1.3
1,033,349 - SM_b21369 0.73 -1.1
1,033,350 + SM_b21369 0.73 -0.6
1,033,350 + SM_b21369 0.73 +0.1
1,033,350 + SM_b21369 0.73 -0.5
1,033,350 + SM_b21369 0.73 -0.6
1,033,350 + SM_b21369 0.73 +0.5
1,033,351 - SM_b21369 0.73 -0.5
1,033,351 - SM_b21369 0.73 -0.5
1,033,351 - SM_b21369 0.73 +1.7
1,033,389 - SM_b21369 0.76 -0.0
1,033,389 - SM_b21369 0.76 +0.8
1,033,555 + -0.2
1,033,607 - -0.9
1,033,745 + -1.1
1,033,745 + -1.0
1,033,869 + +0.2
1,033,870 - -0.2
1,034,019 + SM_b21370 0.15 +0.7
1,034,019 + SM_b21370 0.15 -0.1
1,034,019 + SM_b21370 0.15 -0.9
1,034,058 + SM_b21370 0.17 -0.3
1,034,058 + SM_b21370 0.17 -0.1
1,034,091 + SM_b21370 0.18 +1.2
1,034,092 - SM_b21370 0.18 +0.7
1,034,115 + SM_b21370 0.19 -0.1
1,034,116 - SM_b21370 0.19 +0.4
1,034,116 - SM_b21370 0.19 -0.1
1,034,437 - SM_b21370 0.32 +1.2
1,034,437 - SM_b21370 0.32 -0.7
1,034,480 - SM_b21370 0.33 +0.9
1,034,512 - SM_b21370 0.35 +0.2
1,034,768 + SM_b21370 0.45 +1.0
1,034,768 + SM_b21370 0.45 +0.4
1,034,810 - SM_b21370 0.46 +0.4
1,034,820 + SM_b21370 0.47 -0.3
1,034,821 - SM_b21370 0.47 -0.8
1,034,821 - SM_b21370 0.47 -1.0
1,034,821 - SM_b21370 0.47 +0.4
1,034,821 - SM_b21370 0.47 +0.7
1,034,821 - SM_b21370 0.47 -1.4
1,034,844 + SM_b21370 0.48 +0.5
1,034,845 - SM_b21370 0.48 -0.5
1,034,845 - SM_b21370 0.48 +0.8
1,034,889 + +1.7
1,035,090 + SM_b21370 0.57 -0.2
1,035,090 + SM_b21370 0.57 -0.2
1,035,090 + SM_b21370 0.57 -0.6
1,035,090 + SM_b21370 0.57 -0.4
1,035,090 + SM_b21370 0.57 -0.9
1,035,091 - SM_b21370 0.58 -0.4
1,035,091 - SM_b21370 0.58 -0.2
1,035,091 - SM_b21370 0.58 +3.3
1,035,214 - SM_b21370 0.62 +0.6
1,035,239 + SM_b21370 0.63 +0.1
1,035,286 + SM_b21370 0.65 -0.6
1,035,287 - SM_b21370 0.65 -0.4
1,035,304 - SM_b21370 0.66 +0.4
1,035,304 - SM_b21370 0.66 +0.8
1,035,304 - SM_b21370 0.66 +0.8
1,035,372 + SM_b21370 0.69 -0.3
1,035,372 + SM_b21370 0.69 -0.3
1,035,373 - SM_b21370 0.69 +0.5
1,035,509 - SM_b21370 0.74 -0.2
1,035,585 + SM_b21370 0.77 +2.8
1,035,585 + SM_b21370 0.77 -0.2
1,035,585 + SM_b21370 0.77 +3.3
1,035,585 + SM_b21370 0.77 -0.4
1,035,585 + SM_b21370 0.77 +0.3
1,035,585 + SM_b21370 0.77 +0.7
1,035,586 - SM_b21370 0.77 +1.1
1,035,586 - SM_b21370 0.77 +0.1
1,035,586 - SM_b21370 0.77 -0.2
1,035,586 - SM_b21370 0.77 +1.8
1,035,586 - SM_b21370 0.77 -0.8
1,035,588 - SM_b21370 0.77 +0.7
1,035,654 + SM_b21370 0.80 -0.3
1,035,654 + SM_b21370 0.80 +0.8
1,035,654 + SM_b21370 0.80 +0.9
1,035,655 - SM_b21370 0.80 +0.1
1,035,663 + SM_b21370 0.80 +0.6
1,035,663 + SM_b21370 0.80 +0.1
1,035,676 - SM_b21370 0.81 -2.0
1,035,676 - SM_b21370 0.81 -0.5
1,035,793 + SM_b21370 0.85 +0.2
1,035,793 + SM_b21370 0.85 -0.1
1,035,793 + SM_b21370 0.85 +1.4
1,035,793 + SM_b21370 0.85 +1.7
1,035,794 - SM_b21370 0.85 +0.4
1,035,794 - SM_b21370 0.85 +0.4
1,035,794 - SM_b21370 0.85 -1.2
1,035,946 - +0.3
1,035,960 + +0.0
1,036,080 + +0.2
1,036,080 + +0.6
1,036,081 - -2.1
1,036,081 - +0.6
1,036,081 - -2.3
1,036,092 + -0.6
1,036,092 + -1.0
1,036,092 + -0.3
1,036,098 + -0.6
1,036,098 + +0.2
1,036,099 - -0.7
1,036,264 + SM_b21371 0.25 -0.6
1,036,264 + SM_b21371 0.25 -0.6
1,036,265 - SM_b21371 0.25 +0.3
1,036,265 - SM_b21371 0.25 +0.4
1,036,265 - SM_b21371 0.25 +0.8
1,036,266 + SM_b21371 0.26 -0.9
1,036,267 - SM_b21371 0.26 +1.1
1,036,679 + SM_b21372 0.13 -0.2
1,036,680 - SM_b21372 0.13 -0.2
1,036,680 - SM_b21372 0.13 -0.1
1,036,680 - SM_b21372 0.13 -1.4
1,036,716 - SM_b21372 0.16 -1.1
1,036,925 + SM_b21372 0.36 -0.6
1,036,925 + SM_b21372 0.36 -1.9
1,036,925 + SM_b21372 0.36 -0.5
1,036,925 + SM_b21372 0.36 +1.7
1,036,926 - SM_b21372 0.36 -0.9
1,036,926 - SM_b21372 0.36 -0.1
1,036,926 - SM_b21372 0.36 +0.8
1,036,982 + SM_b21372 0.41 +1.0
1,036,982 + SM_b21372 0.41 -2.8
1,036,982 + SM_b21372 0.41 +0.4
1,036,982 + SM_b21372 0.41 +2.1
1,036,983 - SM_b21372 0.41 -0.1
1,037,033 + SM_b21372 0.46 +1.0
1,037,034 - SM_b21372 0.46 -0.0
1,037,034 - SM_b21372 0.46 +1.0
1,037,034 - SM_b21372 0.46 -1.3
1,037,141 + SM_b21372 0.56 -1.4
1,037,141 + SM_b21372 0.56 +0.2
1,037,141 + SM_b21372 0.56 -1.5
1,037,142 - SM_b21372 0.56 +0.1

Or see this region's nucleotide sequence