Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21309

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21308 and SM_b21309 overlap by 4 nucleotidesSM_b21309 and SM_b21310 are separated by 8 nucleotidesSM_b21310 and SM_b21311 are separated by 11 nucleotides SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164 _b21308 SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377 _b21309 SM_b21310: SM_b21310 - hypothetical protein, at 974,386 to 975,090 _b21310 SM_b21311: SM_b21311 - glycosyltransferase, at 975,102 to 976,364 _b21311 Position (kb) 972 973 974 975Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 971.434 kb on + strand, within SM_b21308at 971.478 kb on + strand, within SM_b21308at 971.479 kb on - strand, within SM_b21308at 971.540 kb on + strand, within SM_b21308at 971.755 kb on + strand, within SM_b21308at 971.755 kb on + strand, within SM_b21308at 971.809 kb on + strand, within SM_b21308at 972.037 kb on + strandat 972.037 kb on + strandat 972.038 kb on - strandat 972.038 kb on - strandat 972.040 kb on - strandat 972.040 kb on - strandat 972.074 kb on + strandat 972.075 kb on - strandat 972.093 kb on + strandat 972.391 kb on - strand, within SM_b21309at 972.514 kb on - strand, within SM_b21309at 972.586 kb on - strand, within SM_b21309at 972.645 kb on + strand, within SM_b21309at 972.735 kb on + strand, within SM_b21309at 972.736 kb on - strand, within SM_b21309at 972.736 kb on - strand, within SM_b21309at 973.178 kb on + strand, within SM_b21309at 973.178 kb on + strand, within SM_b21309at 973.435 kb on + strand, within SM_b21309at 973.436 kb on - strand, within SM_b21309at 973.436 kb on - strand, within SM_b21309at 973.568 kb on - strand, within SM_b21309at 974.074 kb on + strand, within SM_b21309at 974.074 kb on + strand, within SM_b21309at 974.145 kb on + strand, within SM_b21309at 974.284 kb on + strandat 974.285 kb on - strandat 974.380 kb on + strandat 974.380 kb on + strandat 974.380 kb on + strandat 974.380 kb on + strandat 974.381 kb on - strandat 974.625 kb on + strand, within SM_b21310at 974.626 kb on - strand, within SM_b21310at 974.858 kb on + strand, within SM_b21310at 974.859 kb on - strand, within SM_b21310at 974.859 kb on - strand, within SM_b21310at 974.943 kb on - strand, within SM_b21310at 975.045 kb on + strandat 975.045 kb on + strandat 975.045 kb on + strandat 975.046 kb on - strandat 975.046 kb on - strandat 975.104 kb on - strandat 975.152 kb on - strandat 975.337 kb on - strand, within SM_b21311

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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971,434 + SM_b21308 0.45 -0.5
971,478 + SM_b21308 0.48 -0.6
971,479 - SM_b21308 0.48 +0.1
971,540 + SM_b21308 0.53 +1.7
971,755 + SM_b21308 0.69 +0.9
971,755 + SM_b21308 0.69 -0.3
971,809 + SM_b21308 0.73 +0.8
972,037 + +0.1
972,037 + +0.3
972,038 - +0.5
972,038 - +0.4
972,040 - +0.3
972,040 - +0.5
972,074 + -0.9
972,075 - +0.9
972,093 + -0.3
972,391 - SM_b21309 0.10 -2.2
972,514 - SM_b21309 0.16 -0.8
972,586 - SM_b21309 0.19 -1.5
972,645 + SM_b21309 0.22 -0.3
972,735 + SM_b21309 0.26 +0.7
972,736 - SM_b21309 0.26 -0.2
972,736 - SM_b21309 0.26 +0.2
973,178 + SM_b21309 0.46 -0.8
973,178 + SM_b21309 0.46 +0.6
973,435 + SM_b21309 0.57 +0.1
973,436 - SM_b21309 0.58 -0.4
973,436 - SM_b21309 0.58 +0.7
973,568 - SM_b21309 0.63 -0.7
974,074 + SM_b21309 0.86 +0.1
974,074 + SM_b21309 0.86 +0.1
974,145 + SM_b21309 0.89 +0.2
974,284 + +0.2
974,285 - -0.7
974,380 + -0.2
974,380 + -0.8
974,380 + +1.3
974,380 + -0.5
974,381 - -0.6
974,625 + SM_b21310 0.34 -2.1
974,626 - SM_b21310 0.34 -1.5
974,858 + SM_b21310 0.67 -2.1
974,859 - SM_b21310 0.67 +0.2
974,859 - SM_b21310 0.67 -0.4
974,943 - SM_b21310 0.79 -0.3
975,045 + -1.1
975,045 + +4.9
975,045 + -1.0
975,046 - -0.0
975,046 - +0.5
975,104 - +0.1
975,152 - -0.1
975,337 - SM_b21311 0.19 -0.2

Or see this region's nucleotide sequence