Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21235 and SM_b21236 are separated by 444 nucleotides SM_b21236 and SM_b21237 are separated by 82 nucleotides
SM_b21235: SM_b21235 - formyltransferase, methionyl-tRNA(fMet) N-formyltransferase, at 800,870 to 801,808
_b21235
SM_b21236: SM_b21236 - ATPGTP-binding protein, at 802,253 to 803,104
_b21236
SM_b21237: SM_b21237 - sulfotransferase domain-containing protein, at 803,187 to 804,110
_b21237
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 801.288 kb on - strand, within SM_b21235 at 801.288 kb on - strand, within SM_b21235 at 801.319 kb on + strand, within SM_b21235 at 801.322 kb on - strand, within SM_b21235 at 801.368 kb on + strand, within SM_b21235 at 801.369 kb on - strand, within SM_b21235 at 801.446 kb on - strand, within SM_b21235 at 801.560 kb on + strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.620 kb on + strand, within SM_b21235 at 801.720 kb on - strand at 801.722 kb on + strand at 801.723 kb on - strand at 801.723 kb on - strand at 801.798 kb on - strand at 801.819 kb on + strand at 801.864 kb on - strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.871 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.977 kb on + strand at 801.977 kb on + strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 802.008 kb on + strand at 802.008 kb on + strand at 802.066 kb on - strand at 802.070 kb on + strand at 802.070 kb on + strand at 802.071 kb on - strand at 802.138 kb on + strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.201 kb on + strand at 802.201 kb on + strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.260 kb on + strand at 802.261 kb on - strand at 802.277 kb on + strand at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.526 kb on - strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.611 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.617 kb on - strand, within SM_b21236 at 802.664 kb on + strand, within SM_b21236 at 802.816 kb on + strand, within SM_b21236 at 802.817 kb on - strand, within SM_b21236 at 802.817 kb on - strand, within SM_b21236 at 802.819 kb on + strand, within SM_b21236 at 802.819 kb on + strand, within SM_b21236 at 802.820 kb on - strand, within SM_b21236 at 802.820 kb on - strand, within SM_b21236 at 802.878 kb on + strand, within SM_b21236 at 802.878 kb on + strand, within SM_b21236 at 802.883 kb on - strand, within SM_b21236 at 802.889 kb on + strand, within SM_b21236 at 802.890 kb on - strand, within SM_b21236 at 802.937 kb on + strand, within SM_b21236 at 802.938 kb on - strand, within SM_b21236 at 803.167 kb on - strand at 803.214 kb on + strand at 803.216 kb on + strand at 803.217 kb on - strand at 803.217 kb on - strand at 803.248 kb on + strand at 803.248 kb on + strand at 803.248 kb on + strand at 803.249 kb on - strand at 803.249 kb on - strand at 803.299 kb on + strand, within SM_b21237 at 803.300 kb on - strand, within SM_b21237 at 803.338 kb on - strand, within SM_b21237 at 803.433 kb on + strand, within SM_b21237 at 803.433 kb on + strand, within SM_b21237 at 803.433 kb on + strand, within SM_b21237 at 803.434 kb on - strand, within SM_b21237 at 803.434 kb on - strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.524 kb on + strand, within SM_b21237 at 803.525 kb on - strand, within SM_b21237 at 803.532 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.704 kb on - strand at 803.802 kb on + strand, within SM_b21237 at 803.802 kb on + strand, within SM_b21237 at 803.802 kb on + strand, within SM_b21237 at 803.847 kb on + strand, within SM_b21237 at 803.879 kb on + strand, within SM_b21237 at 803.879 kb on + strand, within SM_b21237 at 803.880 kb on - strand, within SM_b21237 at 803.927 kb on + strand at 803.927 kb on + strand, within SM_b21237 at 803.928 kb on - strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 804.102 kb on + strand at 804.103 kb on - strand at 804.103 kb on - strand at 804.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 801,288 - SM_b21235 0.45 -0.3 801,288 - SM_b21235 0.45 +0.2 801,319 + SM_b21235 0.48 -1.9 801,322 - SM_b21235 0.48 +0.1 801,368 + SM_b21235 0.53 -0.3 801,369 - SM_b21235 0.53 -0.5 801,446 - SM_b21235 0.61 +2.7 801,560 + SM_b21235 0.73 -1.0 801,561 - SM_b21235 0.74 +1.3 801,561 - SM_b21235 0.74 -0.8 801,620 + SM_b21235 0.80 -0.4 801,720 - +0.1 801,722 + +1.7 801,723 - -0.4 801,723 - -1.8 801,798 - -0.8 801,819 + +0.8 801,864 - -0.1 801,865 + +0.5 801,865 + +0.6 801,865 + +0.1 801,866 - -0.3 801,866 - -0.3 801,866 - +0.2 801,866 - -2.3 801,866 - -0.3 801,866 - -0.6 801,871 + -0.1 801,901 + -1.9 801,901 + +1.8 801,901 + -2.0 801,902 - -0.5 801,902 - +1.3 801,902 - -0.4 801,902 - -1.4 801,902 - +0.3 801,902 - -2.7 801,977 + +0.1 801,977 + +0.3 801,978 - -2.1 801,978 - -2.5 801,978 - -0.3 801,978 - +0.1 801,978 - +0.6 802,008 + -0.1 802,008 + -0.0 802,066 - +1.3 802,070 + +0.5 802,070 + -0.5 802,071 - +0.4 802,138 + +0.5 802,139 - +0.4 802,139 - -1.1 802,139 - -0.9 802,201 + -0.3 802,201 + +0.2 802,202 - -0.9 802,202 - +0.3 802,202 - +0.3 802,260 + +0.2 802,261 - +1.1 802,277 + +1.4 802,525 + SM_b21236 0.32 -0.3 802,525 + SM_b21236 0.32 +0.2 802,525 + SM_b21236 0.32 +0.0 802,526 - SM_b21236 0.32 -0.5 802,545 + SM_b21236 0.34 -1.5 802,545 + SM_b21236 0.34 +1.1 802,545 + SM_b21236 0.34 +1.0 802,545 + SM_b21236 0.34 +0.4 802,545 + SM_b21236 0.34 -0.1 802,546 - SM_b21236 0.34 -0.1 802,546 - SM_b21236 0.34 +0.5 802,546 - SM_b21236 0.34 +0.8 802,611 + SM_b21236 0.42 -0.5 802,616 + SM_b21236 0.43 +0.2 802,616 + SM_b21236 0.43 +0.6 802,617 - SM_b21236 0.43 -0.2 802,664 + SM_b21236 0.48 -0.7 802,816 + SM_b21236 0.66 +0.2 802,817 - SM_b21236 0.66 +1.1 802,817 - SM_b21236 0.66 +0.3 802,819 + SM_b21236 0.66 +0.5 802,819 + SM_b21236 0.66 +0.5 802,820 - SM_b21236 0.67 +0.4 802,820 - SM_b21236 0.67 +1.4 802,878 + SM_b21236 0.73 +0.2 802,878 + SM_b21236 0.73 -0.9 802,883 - SM_b21236 0.74 +0.2 802,889 + SM_b21236 0.75 +0.6 802,890 - SM_b21236 0.75 -0.3 802,937 + SM_b21236 0.80 -0.2 802,938 - SM_b21236 0.80 +0.0 803,167 - +0.2 803,214 + -0.8 803,216 + -0.2 803,217 - +0.0 803,217 - -1.3 803,248 + -1.1 803,248 + +1.0 803,248 + -0.8 803,249 - -0.6 803,249 - -0.1 803,299 + SM_b21237 0.12 -1.9 803,300 - SM_b21237 0.12 +0.7 803,338 - SM_b21237 0.16 -1.1 803,433 + SM_b21237 0.27 +0.6 803,433 + SM_b21237 0.27 +0.6 803,433 + SM_b21237 0.27 -0.6 803,434 - SM_b21237 0.27 +0.0 803,434 - SM_b21237 0.27 -0.1 803,520 + SM_b21237 0.36 -0.1 803,520 + SM_b21237 0.36 -0.2 803,520 + SM_b21237 0.36 -1.1 803,524 + SM_b21237 0.36 -0.7 803,525 - SM_b21237 0.37 +0.7 803,532 - SM_b21237 0.37 -0.3 803,681 - SM_b21237 0.53 +0.7 803,681 - SM_b21237 0.53 +0.1 803,681 - SM_b21237 0.53 +0.0 803,704 - +3.7 803,802 + SM_b21237 0.67 +1.3 803,802 + SM_b21237 0.67 +0.1 803,802 + SM_b21237 0.67 +0.8 803,847 + SM_b21237 0.71 -0.4 803,879 + SM_b21237 0.75 -1.1 803,879 + SM_b21237 0.75 +0.3 803,880 - SM_b21237 0.75 +1.4 803,927 + +0.1 803,927 + SM_b21237 0.80 -2.4 803,928 - SM_b21237 0.80 -0.3 803,971 + SM_b21237 0.85 -0.5 803,971 + SM_b21237 0.85 +0.1 803,971 + SM_b21237 0.85 -0.1 803,972 - SM_b21237 0.85 -0.4 803,972 - SM_b21237 0.85 -0.8 803,972 - SM_b21237 0.85 -1.0 803,972 - SM_b21237 0.85 -0.3 804,102 + +0.2 804,103 - +0.4 804,103 - -0.3 804,103 - +0.1
Or see this region's nucleotide sequence