Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21172 and SM_b21173 are separated by 79 nucleotides SM_b21173 and SM_b21174 overlap by 4 nucleotides SM_b21174 and SM_b21175 are separated by 9 nucleotides
SM_b21172: SM_b21172 - hypothetical protein, at 918,536 to 919,345
_b21172
SM_b21173: SM_b21173 - hypothetical protein, at 919,425 to 919,616
_b21173
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
SM_b21175: SM_b21175 - phosphate uptake ABC transporter permease, at 921,140 to 922,102
_b21175
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 918.760 kb on + strand, within SM_b21172 at 918.761 kb on - strand, within SM_b21172 at 918.795 kb on + strand, within SM_b21172 at 918.796 kb on - strand, within SM_b21172 at 918.802 kb on - strand, within SM_b21172 at 918.996 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.272 kb on + strand at 919.501 kb on + strand, within SM_b21173 at 919.502 kb on - strand, within SM_b21173 at 919.517 kb on + strand, within SM_b21173 at 919.699 kb on + strand at 919.699 kb on + strand at 919.702 kb on - strand at 919.752 kb on - strand at 920.331 kb on + strand, within SM_b21174 at 920.908 kb on - strand, within SM_b21174 at 920.913 kb on - strand, within SM_b21174 at 920.929 kb on - strand, within SM_b21174 at 921.088 kb on + strand at 921.141 kb on + strand at 921.141 kb on + strand at 921.366 kb on + strand, within SM_b21175 at 921.756 kb on + strand, within SM_b21175 at 921.786 kb on + strand, within SM_b21175 at 921.811 kb on - strand, within SM_b21175 at 922.011 kb on + strand at 922.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 918,760 + SM_b21172 0.28 -0.4 918,761 - SM_b21172 0.28 -0.9 918,795 + SM_b21172 0.32 -0.2 918,796 - SM_b21172 0.32 -0.3 918,802 - SM_b21172 0.33 -0.9 918,996 + SM_b21172 0.57 +0.3 919,157 + SM_b21172 0.77 -0.7 919,157 + SM_b21172 0.77 +1.2 919,272 + +1.4 919,501 + SM_b21173 0.40 +0.4 919,502 - SM_b21173 0.40 +1.7 919,517 + SM_b21173 0.48 -0.9 919,699 + -2.5 919,699 + -0.6 919,702 - -1.3 919,752 - -3.0 920,331 + SM_b21174 0.47 -4.3 920,908 - SM_b21174 0.85 -2.7 920,913 - SM_b21174 0.86 -5.4 920,929 - SM_b21174 0.87 -3.9 921,088 + -4.6 921,141 + -3.0 921,141 + -1.6 921,366 + SM_b21175 0.23 -4.7 921,756 + SM_b21175 0.64 -3.8 921,786 + SM_b21175 0.67 -2.1 921,811 - SM_b21175 0.70 -4.5 922,011 + -4.5 922,085 - -4.6
Or see this region's nucleotide sequence