Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21116 and SM_b21117 are separated by 83 nucleotides SM_b21117 and SM_b21119 are separated by 250 nucleotides SM_b21119 and SM_b21120 overlap by 23 nucleotides SM_b21120 and SM_b21121 overlap by 8 nucleotides
SM_b21116: SM_b21116 - trifolitoxin biosynthesis protein, at 757,320 to 758,051
_b21116
SM_b21117: SM_b21117 - transcriptional regulator, at 758,135 to 758,593
_b21117
SM_b21119: SM_b21119 - gluconokinase, at 758,844 to 759,380
_b21119
SM_b21120: SM_b21120 - hypothetical protein, at 759,358 to 759,576
_b21120
SM_b21121: SM_b21121 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) <small>(from data)</small>, at 759,569 to 760,732
_b21121
Position (kb) 758
759 Strain fitness (log2 ratio) -1
0
1
2
3 at 757.151 kb on + strand at 757.151 kb on + strand at 757.152 kb on - strand at 757.214 kb on - strand at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.753 kb on + strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.812 kb on + strand, within SM_b21116 at 758.118 kb on + strand at 758.118 kb on + strand at 758.118 kb on + strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.405 kb on + strand, within SM_b21117 at 758.405 kb on + strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.576 kb on - strand at 758.598 kb on + strand at 758.599 kb on - strand at 758.599 kb on - strand at 758.625 kb on + strand at 758.625 kb on + strand at 758.626 kb on - strand at 758.632 kb on + strand at 758.634 kb on + strand at 758.634 kb on + strand at 758.635 kb on - strand at 758.706 kb on + strand at 758.849 kb on + strand at 758.849 kb on + strand at 758.850 kb on - strand at 758.850 kb on - strand at 758.857 kb on - strand at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.302 kb on - strand, within SM_b21119 at 759.469 kb on - strand, within SM_b21120 at 759.469 kb on - strand, within SM_b21120 at 759.469 kb on - strand, within SM_b21120
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 757,151 + +0.1 757,151 + -0.8 757,152 - +0.4 757,214 - -0.4 757,567 + SM_b21116 0.34 +1.5 757,567 + SM_b21116 0.34 -0.0 757,567 + SM_b21116 0.34 +0.0 757,749 + SM_b21116 0.59 -0.8 757,749 + SM_b21116 0.59 +1.3 757,749 + SM_b21116 0.59 +0.5 757,750 - SM_b21116 0.59 -0.7 757,750 - SM_b21116 0.59 +0.3 757,750 - SM_b21116 0.59 -0.5 757,750 - SM_b21116 0.59 -0.5 757,753 + SM_b21116 0.59 -0.9 757,754 - SM_b21116 0.59 +0.7 757,754 - SM_b21116 0.59 -0.4 757,754 - SM_b21116 0.59 -0.6 757,754 - SM_b21116 0.59 +0.4 757,812 + SM_b21116 0.67 -0.4 758,118 + +0.4 758,118 + +0.1 758,118 + +0.6 758,119 - +0.3 758,119 - -0.4 758,119 - -0.5 758,119 - -0.6 758,119 - -0.7 758,119 - -0.1 758,119 - +1.0 758,119 - +0.1 758,119 - -0.2 758,405 + SM_b21117 0.59 -0.4 758,405 + SM_b21117 0.59 +0.2 758,406 - SM_b21117 0.59 +1.0 758,406 - SM_b21117 0.59 +0.1 758,406 - SM_b21117 0.59 -0.7 758,406 - SM_b21117 0.59 +0.7 758,406 - SM_b21117 0.59 -0.0 758,522 + SM_b21117 0.84 -0.1 758,522 + SM_b21117 0.84 +1.0 758,522 + SM_b21117 0.84 +1.0 758,523 - SM_b21117 0.85 +1.2 758,523 - SM_b21117 0.85 +0.5 758,576 - +0.5 758,598 + +0.3 758,599 - +1.0 758,599 - +0.6 758,625 + -1.0 758,625 + -0.5 758,626 - -0.3 758,632 + -0.4 758,634 + -0.6 758,634 + -0.0 758,635 - +0.0 758,706 + -0.1 758,849 + -0.4 758,849 + +0.3 758,850 - -1.2 758,850 - -0.4 758,857 - +3.3 759,301 + SM_b21119 0.85 -0.6 759,301 + SM_b21119 0.85 +0.3 759,301 + SM_b21119 0.85 -0.7 759,301 + SM_b21119 0.85 -1.1 759,301 + SM_b21119 0.85 -0.0 759,302 - SM_b21119 0.85 -0.1 759,469 - SM_b21120 0.51 +0.3 759,469 - SM_b21120 0.51 -0.8 759,469 - SM_b21120 0.51 -1.5
Or see this region's nucleotide sequence