Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21086 and SM_b21087 are separated by 144 nucleotides SM_b21087 and SM_b21088 are separated by 323 nucleotides SM_b21088 and SM_b21089 are separated by 162 nucleotides
SM_b21086: SM_b21086 - hypothetical protein, at 725,358 to 725,834
_b21086
SM_b21087: SM_b21087 - conjugal transfer protein, at 725,979 to 730,598
_b21087
SM_b21088: SM_b21088 - hypothetical protein, at 730,922 to 731,137
_b21088
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
Position (kb) 725
726
727
728
729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 725.064 kb on + strand at 725.122 kb on + strand at 725.122 kb on + strand at 725.123 kb on - strand at 725.123 kb on - strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.126 kb on - strand at 725.126 kb on - strand at 725.167 kb on - strand at 725.230 kb on + strand at 725.231 kb on - strand at 725.231 kb on - strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.355 kb on - strand at 725.375 kb on - strand at 725.375 kb on - strand at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.451 kb on + strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.492 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.506 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.802 kb on + strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.823 kb on + strand at 725.827 kb on + strand at 725.854 kb on - strand at 725.877 kb on - strand at 725.937 kb on - strand at 725.937 kb on - strand at 726.102 kb on + strand at 726.381 kb on + strand at 726.381 kb on + strand at 726.877 kb on - strand, within SM_b21087 at 728.333 kb on + strand, within SM_b21087 at 728.433 kb on + strand, within SM_b21087 at 728.502 kb on - strand, within SM_b21087 at 730.571 kb on + strand at 730.589 kb on + strand at 730.590 kb on - strand at 730.590 kb on - strand at 730.596 kb on + strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.677 kb on - strand at 730.784 kb on + strand at 730.784 kb on + strand at 730.785 kb on - strand at 730.912 kb on + strand at 730.912 kb on + strand at 730.913 kb on - strand at 730.938 kb on - strand at 730.998 kb on + strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.106 kb on + strand, within SM_b21088 at 731.141 kb on + strand at 731.141 kb on + strand at 731.142 kb on - strand at 731.142 kb on - strand at 731.155 kb on - strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.292 kb on - strand at 731.295 kb on + strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 725,064 + +0.4 725,122 + -0.7 725,122 + -0.4 725,123 - -0.6 725,123 - -0.1 725,125 + -0.6 725,125 + -0.4 725,125 + -0.3 725,126 - +0.3 725,126 - -0.1 725,167 - +1.1 725,230 + +1.0 725,231 - +0.3 725,231 - -3.0 725,354 + +0.0 725,354 + -0.3 725,354 + +0.2 725,355 - +0.5 725,375 - -0.1 725,375 - -0.1 725,412 + SM_b21086 0.11 +0.4 725,412 + SM_b21086 0.11 -0.4 725,412 + SM_b21086 0.11 +0.5 725,413 - SM_b21086 0.12 -0.9 725,413 - SM_b21086 0.12 -0.7 725,413 - SM_b21086 0.12 -1.8 725,451 + SM_b21086 0.19 -0.1 725,452 - SM_b21086 0.20 -0.6 725,452 - SM_b21086 0.20 +0.4 725,452 - SM_b21086 0.20 -0.3 725,492 - SM_b21086 0.28 +0.5 725,496 - SM_b21086 0.29 +0.2 725,496 - SM_b21086 0.29 +0.1 725,506 - SM_b21086 0.31 -0.4 725,543 - SM_b21086 0.39 -0.6 725,543 - SM_b21086 0.39 +0.0 725,550 + SM_b21086 0.40 +0.5 725,550 + SM_b21086 0.40 +1.1 725,802 + -0.6 725,803 - +0.6 725,803 - +0.4 725,803 - -0.2 725,803 - +1.2 725,803 - +0.8 725,823 + -1.6 725,827 + +1.6 725,854 - +1.7 725,877 - +0.0 725,937 - -0.5 725,937 - -0.5 726,102 + -0.2 726,381 + -0.0 726,381 + +0.1 726,877 - SM_b21087 0.19 +2.1 728,333 + SM_b21087 0.51 +0.4 728,433 + SM_b21087 0.53 +0.4 728,502 - SM_b21087 0.55 -0.8 730,571 + -0.0 730,589 + -0.0 730,590 - +0.1 730,590 - +0.5 730,596 + -0.2 730,597 - +0.0 730,597 - +0.2 730,597 - -0.5 730,677 - -0.8 730,784 + -0.3 730,784 + +0.4 730,785 - -0.7 730,912 + +0.6 730,912 + +0.5 730,913 - -2.2 730,938 - +0.4 730,998 + SM_b21088 0.35 +0.0 730,999 - SM_b21088 0.36 +1.3 730,999 - SM_b21088 0.36 +0.7 730,999 - SM_b21088 0.36 -0.0 730,999 - SM_b21088 0.36 +0.3 731,015 + SM_b21088 0.43 +0.2 731,015 + SM_b21088 0.43 +1.2 731,015 + SM_b21088 0.43 +0.1 731,106 + SM_b21088 0.85 -0.2 731,141 + -1.0 731,141 + +0.1 731,142 - +0.3 731,142 - -0.4 731,155 - +0.9 731,291 + +0.2 731,291 + +0.3 731,291 + -0.4 731,292 - +0.5 731,295 + -0.9 731,296 - -0.2 731,296 - -0.5 731,296 - -1.1 731,296 - -0.3 731,372 + -0.4 731,373 - -0.5 731,532 + SM_b21089 0.22 +0.1 731,594 - SM_b21089 0.27 -1.2 731,594 - SM_b21089 0.27 +0.4
Or see this region's nucleotide sequence