Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21035 and SM_b21036 are separated by 138 nucleotides SM_b21036 and SM_b21037 are separated by 162 nucleotides SM_b21037 and SM_b21038 are separated by 6 nucleotides SM_b21038 and SM_b21039 are separated by 13 nucleotides
SM_b21035: SM_b21035 - hypothetical protein, at 653,580 to 653,798
_b21035
SM_b21036: SM_b21036 - hypothetical protein, at 653,937 to 654,485
_b21036
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 653.672 kb on + strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.771 kb on + strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.992 kb on - strand, within SM_b21036 at 654.533 kb on + strand at 654.533 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.541 kb on + strand at 654.542 kb on - strand at 654.542 kb on - strand at 654.621 kb on - strand at 654.762 kb on - strand at 654.768 kb on + strand at 654.768 kb on + strand at 654.769 kb on - strand at 654.769 kb on - strand at 654.795 kb on + strand at 654.796 kb on - strand at 654.833 kb on + strand, within SM_b21037 at 654.833 kb on + strand, within SM_b21037 at 654.834 kb on - strand, within SM_b21037 at 654.838 kb on - strand, within SM_b21037 at 654.852 kb on + strand, within SM_b21037 at 655.047 kb on + strand, within SM_b21037 at 655.048 kb on - strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.319 kb on + strand, within SM_b21037 at 655.320 kb on - strand, within SM_b21037 at 655.475 kb on - strand, within SM_b21037 at 655.701 kb on + strand, within SM_b21037 at 655.702 kb on - strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.065 kb on + strand, within SM_b21037 at 656.132 kb on - strand at 656.139 kb on + strand at 656.139 kb on + strand at 656.184 kb on + strand at 656.185 kb on - strand at 656.384 kb on + strand, within SM_b21038 at 656.448 kb on + strand, within SM_b21038 at 656.449 kb on - strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.501 kb on - strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.812 kb on + strand, within SM_b21038 at 656.813 kb on - strand, within SM_b21038 at 656.837 kb on - strand, within SM_b21038 at 656.909 kb on - strand, within SM_b21038 at 656.913 kb on + strand, within SM_b21038 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 653,672 + SM_b21035 0.42 -0.4 653,673 - SM_b21035 0.42 -0.2 653,673 - SM_b21035 0.42 +0.0 653,771 + SM_b21035 0.87 -4.4 653,772 - SM_b21035 0.88 -0.0 653,772 - SM_b21035 0.88 -0.8 653,954 + -1.1 653,954 + +0.9 653,954 + -0.1 653,954 + +0.4 653,992 - SM_b21036 0.10 -0.5 654,533 + -0.2 654,533 + -0.0 654,533 + -0.6 654,534 - -0.6 654,534 - -0.2 654,541 + -1.5 654,542 - -1.5 654,542 - +0.5 654,621 - -0.2 654,762 - -0.9 654,768 + +0.3 654,768 + +0.5 654,769 - +1.7 654,769 - -1.3 654,795 + -0.0 654,796 - -0.4 654,833 + SM_b21037 0.12 +0.5 654,833 + SM_b21037 0.12 +0.2 654,834 - SM_b21037 0.12 +0.1 654,838 - SM_b21037 0.12 +0.3 654,852 + SM_b21037 0.13 +0.2 655,047 + SM_b21037 0.25 +2.3 655,048 - SM_b21037 0.25 -2.8 655,230 + SM_b21037 0.36 -0.9 655,230 + SM_b21037 0.36 -1.0 655,287 + SM_b21037 0.40 -2.2 655,287 + SM_b21037 0.40 +0.1 655,319 + SM_b21037 0.42 -0.6 655,320 - SM_b21037 0.42 -0.3 655,475 - SM_b21037 0.52 -0.3 655,701 + SM_b21037 0.66 +1.7 655,702 - SM_b21037 0.66 +1.0 656,013 + SM_b21037 0.86 +1.7 656,013 + SM_b21037 0.86 -0.1 656,013 + SM_b21037 0.86 -0.6 656,065 + SM_b21037 0.89 +0.3 656,132 - +0.2 656,139 + -1.1 656,139 + +1.0 656,184 + +0.8 656,185 - +1.4 656,384 + SM_b21038 0.14 -0.9 656,448 + SM_b21038 0.20 +1.1 656,449 - SM_b21038 0.20 +0.7 656,496 + SM_b21038 0.25 +0.2 656,496 + SM_b21038 0.25 +0.5 656,496 + SM_b21038 0.25 +0.3 656,496 + SM_b21038 0.25 +0.4 656,497 - SM_b21038 0.25 -0.5 656,497 - SM_b21038 0.25 +1.7 656,497 - SM_b21038 0.25 +0.3 656,497 - SM_b21038 0.25 +0.4 656,497 - SM_b21038 0.25 +0.4 656,501 - SM_b21038 0.26 -0.7 656,502 + SM_b21038 0.26 -1.8 656,502 + SM_b21038 0.26 -0.8 656,502 + SM_b21038 0.26 -0.1 656,502 + SM_b21038 0.26 +0.0 656,503 - SM_b21038 0.26 -0.1 656,503 - SM_b21038 0.26 +0.4 656,503 - SM_b21038 0.26 -0.9 656,503 - SM_b21038 0.26 +0.4 656,503 - SM_b21038 0.26 +0.6 656,503 - SM_b21038 0.26 +1.9 656,503 - SM_b21038 0.26 +0.1 656,503 - SM_b21038 0.26 +0.6 656,812 + SM_b21038 0.57 -0.3 656,813 - SM_b21038 0.58 +0.3 656,837 - SM_b21038 0.60 -1.2 656,909 - SM_b21038 0.67 -0.5 656,913 + SM_b21038 0.68 +1.1 657,189 + +0.3 657,190 - -0.9 657,190 - +1.3
Or see this region's nucleotide sequence