Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20932

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20931 and SM_b20932 are separated by 65 nucleotidesSM_b20932 and SM_b20933 are separated by 179 nucleotides SM_b20931: SM_b20931 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,154,870 to 1,156,054 _b20931 SM_b20932: SM_b20932 - endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein, at 1,156,120 to 1,157,517 _b20932 SM_b20933: SM_b20933 - two-component sensor histidine kinase, at 1,157,697 to 1,160,420 _b20933 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1155.233 kb on + strand, within SM_b20931at 1155.453 kb on - strand, within SM_b20931at 1155.453 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.497 kb on + strand, within SM_b20931at 1155.587 kb on - strand, within SM_b20931at 1155.938 kb on + strandat 1155.939 kb on - strandat 1155.939 kb on - strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.941 kb on - strandat 1156.149 kb on - strandat 1156.149 kb on - strandat 1156.244 kb on + strandat 1156.244 kb on + strandat 1156.245 kb on - strandat 1156.245 kb on - strandat 1156.304 kb on + strand, within SM_b20932at 1156.340 kb on + strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.427 kb on - strand, within SM_b20932at 1156.427 kb on - strand, within SM_b20932at 1156.435 kb on - strand, within SM_b20932at 1156.565 kb on + strand, within SM_b20932at 1156.565 kb on + strand, within SM_b20932at 1156.586 kb on + strand, within SM_b20932at 1156.587 kb on - strand, within SM_b20932at 1156.611 kb on - strand, within SM_b20932at 1156.617 kb on - strand, within SM_b20932at 1156.617 kb on - strand, within SM_b20932at 1156.718 kb on + strand, within SM_b20932at 1156.731 kb on + strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.752 kb on + strand, within SM_b20932at 1156.815 kb on + strand, within SM_b20932at 1156.933 kb on + strandat 1157.039 kb on - strand, within SM_b20932at 1157.051 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.180 kb on - strand, within SM_b20932at 1157.180 kb on - strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.262 kb on - strand, within SM_b20932at 1157.262 kb on - strand, within SM_b20932at 1157.278 kb on + strand, within SM_b20932at 1157.278 kb on + strand, within SM_b20932at 1157.309 kb on + strand, within SM_b20932at 1157.330 kb on + strand, within SM_b20932at 1157.330 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.337 kb on - strand, within SM_b20932at 1157.337 kb on - strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.355 kb on + strand, within SM_b20932at 1157.474 kb on + strandat 1157.475 kb on - strandat 1157.477 kb on + strandat 1157.591 kb on + strandat 1157.610 kb on - strandat 1157.610 kb on - strandat 1157.610 kb on - strandat 1157.764 kb on - strandat 1157.800 kb on - strandat 1157.829 kb on + strandat 1157.830 kb on - strandat 1158.122 kb on + strand, within SM_b20933at 1158.287 kb on - strand, within SM_b20933

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,155,233 + SM_b20931 0.31 +0.2
1,155,453 - SM_b20931 0.49 -0.6
1,155,453 - SM_b20931 0.49 +0.7
1,155,471 - SM_b20931 0.51 +0.3
1,155,471 - SM_b20931 0.51 -0.0
1,155,471 - SM_b20931 0.51 -0.1
1,155,497 + SM_b20931 0.53 -0.1
1,155,587 - SM_b20931 0.61 +1.7
1,155,938 + -0.7
1,155,939 - +0.8
1,155,939 - -0.2
1,155,940 + -0.7
1,155,940 + -1.1
1,155,940 + +2.0
1,155,940 + -0.5
1,155,941 - -0.5
1,156,149 - -0.6
1,156,149 - -0.4
1,156,244 + -2.0
1,156,244 + -0.8
1,156,245 - -0.6
1,156,245 - -0.8
1,156,304 + SM_b20932 0.13 -1.3
1,156,340 + SM_b20932 0.16 -0.3
1,156,341 - SM_b20932 0.16 +0.5
1,156,341 - SM_b20932 0.16 -0.2
1,156,341 - SM_b20932 0.16 -0.9
1,156,426 + SM_b20932 0.22 +0.5
1,156,426 + SM_b20932 0.22 -0.5
1,156,426 + SM_b20932 0.22 -0.9
1,156,427 - SM_b20932 0.22 +0.1
1,156,427 - SM_b20932 0.22 +1.2
1,156,435 - SM_b20932 0.23 -1.0
1,156,565 + SM_b20932 0.32 -0.9
1,156,565 + SM_b20932 0.32 -2.0
1,156,586 + SM_b20932 0.33 +0.3
1,156,587 - SM_b20932 0.33 -3.3
1,156,611 - SM_b20932 0.35 -1.0
1,156,617 - SM_b20932 0.36 +2.3
1,156,617 - SM_b20932 0.36 +2.0
1,156,718 + SM_b20932 0.43 -1.3
1,156,731 + SM_b20932 0.44 +0.2
1,156,732 - SM_b20932 0.44 -0.7
1,156,732 - SM_b20932 0.44 -0.1
1,156,733 + SM_b20932 0.44 -0.4
1,156,733 + SM_b20932 0.44 +1.5
1,156,734 - SM_b20932 0.44 -1.6
1,156,734 - SM_b20932 0.44 -0.1
1,156,752 + SM_b20932 0.45 +0.2
1,156,815 + SM_b20932 0.50 -0.1
1,156,933 + +4.7
1,157,039 - SM_b20932 0.66 +0.2
1,157,051 + SM_b20932 0.67 -0.7
1,157,179 + SM_b20932 0.76 -0.3
1,157,179 + SM_b20932 0.76 -0.5
1,157,179 + SM_b20932 0.76 -0.7
1,157,180 - SM_b20932 0.76 -0.5
1,157,180 - SM_b20932 0.76 +0.5
1,157,261 + SM_b20932 0.82 +0.2
1,157,261 + SM_b20932 0.82 +0.3
1,157,261 + SM_b20932 0.82 -0.2
1,157,261 + SM_b20932 0.82 -0.6
1,157,261 + SM_b20932 0.82 -0.3
1,157,261 + SM_b20932 0.82 -0.9
1,157,262 - SM_b20932 0.82 +0.7
1,157,262 - SM_b20932 0.82 +0.3
1,157,278 + SM_b20932 0.83 -0.9
1,157,278 + SM_b20932 0.83 -1.7
1,157,309 + SM_b20932 0.85 -1.7
1,157,330 + SM_b20932 0.87 +0.1
1,157,330 + SM_b20932 0.87 +2.4
1,157,336 + SM_b20932 0.87 +0.2
1,157,336 + SM_b20932 0.87 -3.2
1,157,336 + SM_b20932 0.87 -1.0
1,157,337 - SM_b20932 0.87 +0.3
1,157,337 - SM_b20932 0.87 -0.9
1,157,339 + SM_b20932 0.87 -1.4
1,157,339 + SM_b20932 0.87 -1.8
1,157,339 + SM_b20932 0.87 -1.4
1,157,340 - SM_b20932 0.87 -0.4
1,157,340 - SM_b20932 0.87 +0.1
1,157,340 - SM_b20932 0.87 -0.4
1,157,355 + SM_b20932 0.88 -0.6
1,157,474 + +0.4
1,157,475 - -1.1
1,157,477 + -0.1
1,157,591 + +0.5
1,157,610 - -0.3
1,157,610 - +0.7
1,157,610 - -0.7
1,157,764 - -1.2
1,157,800 - +2.1
1,157,829 + -1.1
1,157,830 - +0.2
1,158,122 + SM_b20933 0.16 +0.7
1,158,287 - SM_b20933 0.22 -1.7

Or see this region's nucleotide sequence