Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20931 and SM_b20932 are separated by 65 nucleotides SM_b20932 and SM_b20933 are separated by 179 nucleotides
SM_b20931: SM_b20931 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,154,870 to 1,156,054
_b20931
SM_b20932: SM_b20932 - endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein, at 1,156,120 to 1,157,517
_b20932
SM_b20933: SM_b20933 - two-component sensor histidine kinase, at 1,157,697 to 1,160,420
_b20933
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1155.233 kb on + strand, within SM_b20931 at 1155.453 kb on - strand, within SM_b20931 at 1155.453 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.497 kb on + strand, within SM_b20931 at 1155.587 kb on - strand, within SM_b20931 at 1155.938 kb on + strand at 1155.939 kb on - strand at 1155.939 kb on - strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.941 kb on - strand at 1156.149 kb on - strand at 1156.149 kb on - strand at 1156.244 kb on + strand at 1156.244 kb on + strand at 1156.245 kb on - strand at 1156.245 kb on - strand at 1156.304 kb on + strand, within SM_b20932 at 1156.340 kb on + strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.427 kb on - strand, within SM_b20932 at 1156.427 kb on - strand, within SM_b20932 at 1156.435 kb on - strand, within SM_b20932 at 1156.565 kb on + strand, within SM_b20932 at 1156.565 kb on + strand, within SM_b20932 at 1156.586 kb on + strand, within SM_b20932 at 1156.587 kb on - strand, within SM_b20932 at 1156.611 kb on - strand, within SM_b20932 at 1156.617 kb on - strand, within SM_b20932 at 1156.617 kb on - strand, within SM_b20932 at 1156.718 kb on + strand, within SM_b20932 at 1156.731 kb on + strand, within SM_b20932 at 1156.732 kb on - strand, within SM_b20932 at 1156.732 kb on - strand, within SM_b20932 at 1156.733 kb on + strand, within SM_b20932 at 1156.733 kb on + strand, within SM_b20932 at 1156.734 kb on - strand, within SM_b20932 at 1156.734 kb on - strand, within SM_b20932 at 1156.752 kb on + strand, within SM_b20932 at 1156.815 kb on + strand, within SM_b20932 at 1156.933 kb on + strand at 1157.039 kb on - strand, within SM_b20932 at 1157.051 kb on + strand, within SM_b20932 at 1157.179 kb on + strand, within SM_b20932 at 1157.179 kb on + strand, within SM_b20932 at 1157.179 kb on + strand, within SM_b20932 at 1157.180 kb on - strand, within SM_b20932 at 1157.180 kb on - strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.261 kb on + strand, within SM_b20932 at 1157.262 kb on - strand, within SM_b20932 at 1157.262 kb on - strand, within SM_b20932 at 1157.278 kb on + strand, within SM_b20932 at 1157.278 kb on + strand, within SM_b20932 at 1157.309 kb on + strand, within SM_b20932 at 1157.330 kb on + strand, within SM_b20932 at 1157.330 kb on + strand, within SM_b20932 at 1157.336 kb on + strand, within SM_b20932 at 1157.336 kb on + strand, within SM_b20932 at 1157.336 kb on + strand, within SM_b20932 at 1157.337 kb on - strand, within SM_b20932 at 1157.337 kb on - strand, within SM_b20932 at 1157.339 kb on + strand, within SM_b20932 at 1157.339 kb on + strand, within SM_b20932 at 1157.339 kb on + strand, within SM_b20932 at 1157.340 kb on - strand, within SM_b20932 at 1157.340 kb on - strand, within SM_b20932 at 1157.340 kb on - strand, within SM_b20932 at 1157.355 kb on + strand, within SM_b20932 at 1157.474 kb on + strand at 1157.475 kb on - strand at 1157.477 kb on + strand at 1157.591 kb on + strand at 1157.610 kb on - strand at 1157.610 kb on - strand at 1157.610 kb on - strand at 1157.764 kb on - strand at 1157.800 kb on - strand at 1157.829 kb on + strand at 1157.830 kb on - strand at 1158.122 kb on + strand, within SM_b20933 at 1158.287 kb on - strand, within SM_b20933
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,155,233 + SM_b20931 0.31 +0.2 1,155,453 - SM_b20931 0.49 -0.6 1,155,453 - SM_b20931 0.49 +0.7 1,155,471 - SM_b20931 0.51 +0.3 1,155,471 - SM_b20931 0.51 -0.0 1,155,471 - SM_b20931 0.51 -0.1 1,155,497 + SM_b20931 0.53 -0.1 1,155,587 - SM_b20931 0.61 +1.7 1,155,938 + -0.7 1,155,939 - +0.8 1,155,939 - -0.2 1,155,940 + -0.7 1,155,940 + -1.1 1,155,940 + +2.0 1,155,940 + -0.5 1,155,941 - -0.5 1,156,149 - -0.6 1,156,149 - -0.4 1,156,244 + -2.0 1,156,244 + -0.8 1,156,245 - -0.6 1,156,245 - -0.8 1,156,304 + SM_b20932 0.13 -1.3 1,156,340 + SM_b20932 0.16 -0.3 1,156,341 - SM_b20932 0.16 +0.5 1,156,341 - SM_b20932 0.16 -0.2 1,156,341 - SM_b20932 0.16 -0.9 1,156,426 + SM_b20932 0.22 +0.5 1,156,426 + SM_b20932 0.22 -0.5 1,156,426 + SM_b20932 0.22 -0.9 1,156,427 - SM_b20932 0.22 +0.1 1,156,427 - SM_b20932 0.22 +1.2 1,156,435 - SM_b20932 0.23 -1.0 1,156,565 + SM_b20932 0.32 -0.9 1,156,565 + SM_b20932 0.32 -2.0 1,156,586 + SM_b20932 0.33 +0.3 1,156,587 - SM_b20932 0.33 -3.3 1,156,611 - SM_b20932 0.35 -1.0 1,156,617 - SM_b20932 0.36 +2.3 1,156,617 - SM_b20932 0.36 +2.0 1,156,718 + SM_b20932 0.43 -1.3 1,156,731 + SM_b20932 0.44 +0.2 1,156,732 - SM_b20932 0.44 -0.7 1,156,732 - SM_b20932 0.44 -0.1 1,156,733 + SM_b20932 0.44 -0.4 1,156,733 + SM_b20932 0.44 +1.5 1,156,734 - SM_b20932 0.44 -1.6 1,156,734 - SM_b20932 0.44 -0.1 1,156,752 + SM_b20932 0.45 +0.2 1,156,815 + SM_b20932 0.50 -0.1 1,156,933 + +4.7 1,157,039 - SM_b20932 0.66 +0.2 1,157,051 + SM_b20932 0.67 -0.7 1,157,179 + SM_b20932 0.76 -0.3 1,157,179 + SM_b20932 0.76 -0.5 1,157,179 + SM_b20932 0.76 -0.7 1,157,180 - SM_b20932 0.76 -0.5 1,157,180 - SM_b20932 0.76 +0.5 1,157,261 + SM_b20932 0.82 +0.2 1,157,261 + SM_b20932 0.82 +0.3 1,157,261 + SM_b20932 0.82 -0.2 1,157,261 + SM_b20932 0.82 -0.6 1,157,261 + SM_b20932 0.82 -0.3 1,157,261 + SM_b20932 0.82 -0.9 1,157,262 - SM_b20932 0.82 +0.7 1,157,262 - SM_b20932 0.82 +0.3 1,157,278 + SM_b20932 0.83 -0.9 1,157,278 + SM_b20932 0.83 -1.7 1,157,309 + SM_b20932 0.85 -1.7 1,157,330 + SM_b20932 0.87 +0.1 1,157,330 + SM_b20932 0.87 +2.4 1,157,336 + SM_b20932 0.87 +0.2 1,157,336 + SM_b20932 0.87 -3.2 1,157,336 + SM_b20932 0.87 -1.0 1,157,337 - SM_b20932 0.87 +0.3 1,157,337 - SM_b20932 0.87 -0.9 1,157,339 + SM_b20932 0.87 -1.4 1,157,339 + SM_b20932 0.87 -1.8 1,157,339 + SM_b20932 0.87 -1.4 1,157,340 - SM_b20932 0.87 -0.4 1,157,340 - SM_b20932 0.87 +0.1 1,157,340 - SM_b20932 0.87 -0.4 1,157,355 + SM_b20932 0.88 -0.6 1,157,474 + +0.4 1,157,475 - -1.1 1,157,477 + -0.1 1,157,591 + +0.5 1,157,610 - -0.3 1,157,610 - +0.7 1,157,610 - -0.7 1,157,764 - -1.2 1,157,800 - +2.1 1,157,829 + -1.1 1,157,830 - +0.2 1,158,122 + SM_b20933 0.16 +0.7 1,158,287 - SM_b20933 0.22 -1.7
Or see this region's nucleotide sequence