Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20877 and SM_b20878 are separated by 39 nucleotides SM_b20878 and SM_b20879 are separated by 20 nucleotides SM_b20879 and SM_b20880 are separated by 598 nucleotides
SM_b20877: SM_b20877 - oxidoreductase, at 1,283,304 to 1,284,434
_b20877
SM_b20878: SM_b20878 - hypothetical protein, at 1,284,474 to 1,285,190
_b20878
SM_b20879: SM_b20879 - hypothetical protein, at 1,285,211 to 1,285,663
_b20879
SM_b20880: SM_b20880 - ATP-dependent RNA helicase, at 1,286,262 to 1,287,773
_b20880
Position (kb)
1285
1286 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1284.284 kb on + strand, within SM_b20877 at 1284.284 kb on + strand, within SM_b20877 at 1284.284 kb on + strand, within SM_b20877 at 1284.285 kb on - strand, within SM_b20877 at 1284.285 kb on - strand, within SM_b20877 at 1284.462 kb on - strand at 1284.543 kb on - strand at 1284.543 kb on - strand at 1284.883 kb on + strand, within SM_b20878 at 1284.908 kb on - strand, within SM_b20878 at 1284.978 kb on + strand, within SM_b20878 at 1285.395 kb on + strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.463 kb on - strand, within SM_b20879 at 1285.464 kb on + strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.664 kb on + strand at 1285.664 kb on + strand at 1285.665 kb on - strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.691 kb on - strand at 1285.750 kb on + strand at 1285.868 kb on + strand at 1285.868 kb on + strand at 1285.868 kb on + strand at 1285.869 kb on - strand at 1285.869 kb on - strand at 1285.964 kb on + strand at 1285.965 kb on - strand at 1286.030 kb on - strand at 1286.030 kb on - strand at 1286.153 kb on + strand at 1286.255 kb on - strand at 1286.257 kb on - strand at 1286.557 kb on + strand, within SM_b20880
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,284,284 + SM_b20877 0.87 +1.1 1,284,284 + SM_b20877 0.87 -0.3 1,284,284 + SM_b20877 0.87 +0.0 1,284,285 - SM_b20877 0.87 -0.4 1,284,285 - SM_b20877 0.87 +0.2 1,284,462 - +0.5 1,284,543 - -0.4 1,284,543 - +0.9 1,284,883 + SM_b20878 0.57 -0.1 1,284,908 - SM_b20878 0.61 +0.1 1,284,978 + SM_b20878 0.70 -0.2 1,285,395 + SM_b20879 0.41 -0.6 1,285,396 - SM_b20879 0.41 -0.9 1,285,396 - SM_b20879 0.41 +1.3 1,285,396 - SM_b20879 0.41 +1.1 1,285,462 + SM_b20879 0.55 +0.6 1,285,462 + SM_b20879 0.55 -0.4 1,285,462 + SM_b20879 0.55 +0.5 1,285,462 + SM_b20879 0.55 -0.2 1,285,463 - SM_b20879 0.56 +0.3 1,285,464 + SM_b20879 0.56 +0.2 1,285,465 - SM_b20879 0.56 -2.2 1,285,465 - SM_b20879 0.56 +0.1 1,285,465 - SM_b20879 0.56 +0.7 1,285,465 - SM_b20879 0.56 +1.2 1,285,465 - SM_b20879 0.56 +0.5 1,285,664 + -0.4 1,285,664 + -0.9 1,285,665 - -1.8 1,285,690 + -0.5 1,285,690 + -0.2 1,285,690 + +0.7 1,285,690 + +0.3 1,285,690 + -0.1 1,285,691 - -0.2 1,285,750 + +1.4 1,285,868 + +0.4 1,285,868 + -0.2 1,285,868 + -0.1 1,285,869 - +2.9 1,285,869 - +0.3 1,285,964 + +0.5 1,285,965 - +1.2 1,286,030 - -0.3 1,286,030 - -1.2 1,286,153 + -0.5 1,286,255 - -0.1 1,286,257 - +0.4 1,286,557 + SM_b20880 0.20 -0.3
Or see this region's nucleotide sequence