Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20712 and SM_b20713 are separated by 186 nucleotides SM_b20713 and SM_b20714 are separated by 96 nucleotides
SM_b20712: SM_b20712 - rhizopine uptake ABC transporter substrate-binding protein precursor, at 1,514,330 to 1,515,259
_b20712
SM_b20713: SM_b20713 - sugar uptake ABC transporter ATP-binding protein, at 1,515,446 to 1,516,987
_b20713
SM_b20714: SM_b20714 - sugar uptake ABC transporter permease, at 1,517,084 to 1,518,109
_b20714
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.677 kb on + strand, within SM_b20712 at 1514.678 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.229 kb on + strand at 1515.510 kb on - strand at 1515.662 kb on + strand, within SM_b20713 at 1515.662 kb on + strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.665 kb on + strand, within SM_b20713 at 1516.041 kb on + strand, within SM_b20713 at 1516.042 kb on - strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.089 kb on - strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.159 kb on + strand, within SM_b20713 at 1516.330 kb on - strand, within SM_b20713 at 1516.717 kb on - strand, within SM_b20713 at 1516.717 kb on - strand, within SM_b20713 at 1517.007 kb on + strand at 1517.007 kb on + strand at 1517.089 kb on + strand at 1517.089 kb on + strand at 1517.090 kb on - strand at 1517.417 kb on + strand, within SM_b20714 at 1517.449 kb on - strand, within SM_b20714 at 1517.583 kb on - strand, within SM_b20714 at 1517.699 kb on + strand, within SM_b20714 at 1517.699 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.796 kb on - strand, within SM_b20714 at 1517.882 kb on + strand, within SM_b20714 at 1517.882 kb on + strand, within SM_b20714 at 1517.883 kb on - strand, within SM_b20714
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,514,463 - SM_b20712 0.14 -0.1 1,514,463 - SM_b20712 0.14 -1.3 1,514,463 - SM_b20712 0.14 +0.2 1,514,648 + SM_b20712 0.34 -1.0 1,514,648 + SM_b20712 0.34 +0.1 1,514,649 - SM_b20712 0.34 +0.5 1,514,649 - SM_b20712 0.34 +1.1 1,514,677 + SM_b20712 0.37 -1.2 1,514,678 - SM_b20712 0.37 +0.2 1,514,753 - SM_b20712 0.45 -0.3 1,514,753 - SM_b20712 0.45 +1.7 1,515,200 + -0.2 1,515,200 + -0.3 1,515,200 + +0.3 1,515,201 - -0.9 1,515,201 - -0.2 1,515,201 - +1.9 1,515,201 - -0.2 1,515,201 - -1.7 1,515,201 - +0.3 1,515,229 + +1.7 1,515,510 - +0.7 1,515,662 + SM_b20713 0.14 -0.1 1,515,662 + SM_b20713 0.14 +0.7 1,515,663 - SM_b20713 0.14 +0.0 1,515,663 - SM_b20713 0.14 +0.0 1,515,665 + SM_b20713 0.14 +0.5 1,516,041 + SM_b20713 0.39 +0.6 1,516,042 - SM_b20713 0.39 -0.3 1,516,088 + SM_b20713 0.42 +0.7 1,516,088 + SM_b20713 0.42 +1.6 1,516,089 - SM_b20713 0.42 +2.7 1,516,157 + SM_b20713 0.46 +0.1 1,516,157 + SM_b20713 0.46 +1.7 1,516,157 + SM_b20713 0.46 -0.4 1,516,157 + SM_b20713 0.46 +0.1 1,516,157 + SM_b20713 0.46 +1.4 1,516,158 - SM_b20713 0.46 +0.7 1,516,158 - SM_b20713 0.46 +1.5 1,516,159 + SM_b20713 0.46 -0.4 1,516,330 - SM_b20713 0.57 +2.2 1,516,717 - SM_b20713 0.82 -1.5 1,516,717 - SM_b20713 0.82 +1.2 1,517,007 + +0.5 1,517,007 + -2.0 1,517,089 + -2.1 1,517,089 + -0.4 1,517,090 - -2.5 1,517,417 + SM_b20714 0.32 +0.9 1,517,449 - SM_b20714 0.36 -1.9 1,517,583 - SM_b20714 0.49 -1.5 1,517,699 + SM_b20714 0.60 -0.5 1,517,699 + SM_b20714 0.60 +0.2 1,517,795 + SM_b20714 0.69 +1.7 1,517,795 + SM_b20714 0.69 +0.3 1,517,795 + SM_b20714 0.69 -0.3 1,517,796 - SM_b20714 0.69 -0.4 1,517,882 + SM_b20714 0.78 -0.2 1,517,882 + SM_b20714 0.78 -0.4 1,517,883 - SM_b20714 0.78 -0.0
Or see this region's nucleotide sequence