Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20494 and SM_b20495 are separated by 880 nucleotides SM_b20495 and SM_b20496 are separated by 432 nucleotides
SM_b20494: SM_b20494 - transcriptional regulator, at 511,441 to 512,337
_b20494
SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921
_b20495
SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964
_b20496
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 512.254 kb on + strand at 512.254 kb on + strand at 512.254 kb on + strand at 512.255 kb on - strand at 512.526 kb on + strand at 512.526 kb on + strand at 512.529 kb on + strand at 512.530 kb on - strand at 512.530 kb on - strand at 512.553 kb on + strand at 512.561 kb on + strand at 512.562 kb on - strand at 512.614 kb on - strand at 512.614 kb on - strand at 512.707 kb on + strand at 512.707 kb on + strand at 512.707 kb on + strand at 512.732 kb on + strand at 512.748 kb on + strand at 513.061 kb on + strand at 513.061 kb on + strand at 513.062 kb on - strand at 513.103 kb on + strand at 513.246 kb on + strand at 513.293 kb on + strand at 513.294 kb on - strand at 513.356 kb on - strand at 513.440 kb on + strand, within SM_b20495 at 513.718 kb on + strand, within SM_b20495 at 513.718 kb on + strand, within SM_b20495 at 513.719 kb on - strand, within SM_b20495 at 513.737 kb on + strand, within SM_b20495 at 513.738 kb on - strand, within SM_b20495 at 513.801 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.945 kb on - strand, within SM_b20495 at 513.971 kb on - strand, within SM_b20495 at 513.971 kb on - strand, within SM_b20495 at 514.058 kb on + strand, within SM_b20495 at 514.059 kb on - strand, within SM_b20495 at 514.061 kb on + strand, within SM_b20495 at 514.077 kb on - strand, within SM_b20495 at 514.127 kb on + strand, within SM_b20495 at 514.158 kb on - strand, within SM_b20495 at 514.170 kb on - strand, within SM_b20495 at 514.263 kb on + strand, within SM_b20495 at 514.418 kb on + strand, within SM_b20495 at 514.418 kb on - strand, within SM_b20495 at 514.420 kb on + strand, within SM_b20495 at 514.421 kb on - strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.688 kb on + strand, within SM_b20495 at 514.689 kb on - strand, within SM_b20495 at 514.741 kb on + strand, within SM_b20495 at 514.810 kb on - strand at 514.820 kb on + strand at 514.885 kb on - strand at 514.885 kb on - strand at 515.144 kb on + strand at 515.145 kb on - strand at 515.356 kb on - strand at 515.718 kb on + strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.823 kb on + strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.918 kb on + strand, within SM_b20496 at 515.919 kb on - strand, within SM_b20496
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 512,254 + -0.5 512,254 + -0.9 512,254 + -1.2 512,255 - +1.7 512,526 + +0.4 512,526 + +1.3 512,529 + -0.1 512,530 - -0.3 512,530 - -0.1 512,553 + +0.0 512,561 + -2.8 512,562 - +0.3 512,614 - -0.6 512,614 - +0.3 512,707 + -1.6 512,707 + -1.3 512,707 + -0.0 512,732 + -1.7 512,748 + -0.6 513,061 + -0.5 513,061 + -0.1 513,062 - +0.2 513,103 + -0.5 513,246 + +0.3 513,293 + +1.5 513,294 - -0.4 513,356 - +0.2 513,440 + SM_b20495 0.13 -0.1 513,718 + SM_b20495 0.29 +0.2 513,718 + SM_b20495 0.29 +0.2 513,719 - SM_b20495 0.29 +1.1 513,737 + SM_b20495 0.30 +1.7 513,738 - SM_b20495 0.31 -0.2 513,801 - SM_b20495 0.34 +0.5 513,945 - SM_b20495 0.43 -0.7 513,945 - SM_b20495 0.43 -0.5 513,945 - SM_b20495 0.43 +0.1 513,945 - SM_b20495 0.43 -0.2 513,945 - SM_b20495 0.43 +0.5 513,945 - SM_b20495 0.43 -0.1 513,971 - SM_b20495 0.44 +0.9 513,971 - SM_b20495 0.44 -0.8 514,058 + SM_b20495 0.49 +0.1 514,059 - SM_b20495 0.49 +0.9 514,061 + SM_b20495 0.49 -0.7 514,077 - SM_b20495 0.50 -0.4 514,127 + SM_b20495 0.53 -0.3 514,158 - SM_b20495 0.55 +0.5 514,170 - SM_b20495 0.56 -0.3 514,263 + SM_b20495 0.61 +0.6 514,418 + SM_b20495 0.70 +0.8 514,418 - SM_b20495 0.70 -0.3 514,420 + SM_b20495 0.71 -1.3 514,421 - SM_b20495 0.71 +1.3 514,664 + SM_b20495 0.85 +0.5 514,664 + SM_b20495 0.85 +0.3 514,664 + SM_b20495 0.85 -0.8 514,664 + SM_b20495 0.85 +4.7 514,664 + SM_b20495 0.85 +0.4 514,664 + SM_b20495 0.85 -0.3 514,664 + SM_b20495 0.85 -0.4 514,665 - SM_b20495 0.85 -0.4 514,665 - SM_b20495 0.85 +0.1 514,665 - SM_b20495 0.85 -0.1 514,667 - SM_b20495 0.85 +3.2 514,667 - SM_b20495 0.85 +1.9 514,667 - SM_b20495 0.85 -0.8 514,667 - SM_b20495 0.85 +1.2 514,667 - SM_b20495 0.85 -0.4 514,688 + SM_b20495 0.86 +0.4 514,689 - SM_b20495 0.86 +0.1 514,741 + SM_b20495 0.89 -0.9 514,810 - -0.9 514,820 + +1.3 514,885 - +2.7 514,885 - -0.3 515,144 + +0.6 515,145 - -0.5 515,356 - -0.4 515,718 + SM_b20496 0.23 +0.2 515,719 - SM_b20496 0.23 +0.8 515,719 - SM_b20496 0.23 +0.2 515,719 - SM_b20496 0.23 -2.2 515,823 + SM_b20496 0.29 -0.1 515,875 - SM_b20496 0.32 -0.0 515,875 - SM_b20496 0.32 +0.2 515,875 - SM_b20496 0.32 -0.1 515,875 - SM_b20496 0.32 -2.4 515,918 + SM_b20496 0.35 +0.6 515,919 - SM_b20496 0.35 +0.3
Or see this region's nucleotide sequence