Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20421 and SM_b20422 are separated by 201 nucleotides SM_b20422 and SM_b20423 are separated by 5 nucleotides
SM_b20421: SM_b20421 - transposase, at 434,771 to 435,847
_b20421
SM_b20422: SM_b20422 - oxidoreductase, at 436,049 to 437,128
_b20422
SM_b20423: SM_b20423 - hypothetical protein, at 437,134 to 438,510
_b20423
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.995 kb on + strand at 435.995 kb on + strand at 435.995 kb on + strand at 435.996 kb on - strand at 435.996 kb on - strand at 435.996 kb on - strand at 435.998 kb on - strand at 436.045 kb on - strand at 436.051 kb on - strand at 436.171 kb on + strand, within SM_b20422 at 436.172 kb on - strand, within SM_b20422 at 436.174 kb on - strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.243 kb on - strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.619 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.703 kb on - strand, within SM_b20422 at 436.705 kb on - strand, within SM_b20422 at 436.741 kb on - strand, within SM_b20422 at 436.776 kb on + strand, within SM_b20422 at 436.846 kb on + strand, within SM_b20422 at 436.972 kb on + strand, within SM_b20422 at 436.973 kb on - strand, within SM_b20422 at 437.037 kb on - strand at 437.050 kb on - strand at 437.050 kb on - strand at 437.147 kb on - strand at 437.628 kb on - strand, within SM_b20423 at 437.678 kb on + strand, within SM_b20423 at 437.748 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.786 kb on + strand, within SM_b20423 at 437.900 kb on + strand, within SM_b20423 at 437.901 kb on - strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.949 kb on - strand, within SM_b20423 at 437.952 kb on - strand, within SM_b20423 at 438.053 kb on + strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.113 kb on + strand, within SM_b20423
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 435,951 - -0.3 435,951 - -0.1 435,951 - -0.8 435,951 - +0.5 435,951 - +0.4 435,995 + +0.4 435,995 + -0.3 435,995 + -1.6 435,996 - -0.8 435,996 - -0.2 435,996 - +0.9 435,998 - +0.3 436,045 - -0.5 436,051 - +0.2 436,171 + SM_b20422 0.11 +0.5 436,172 - SM_b20422 0.11 -0.9 436,174 - SM_b20422 0.12 -1.0 436,242 + SM_b20422 0.18 -3.0 436,242 + SM_b20422 0.18 -0.8 436,242 + SM_b20422 0.18 -1.4 436,243 - SM_b20422 0.18 +0.2 436,299 + SM_b20422 0.23 -0.8 436,299 + SM_b20422 0.23 -0.1 436,619 - SM_b20422 0.53 -0.1 436,624 - SM_b20422 0.53 +3.2 436,624 - SM_b20422 0.53 -0.7 436,703 - SM_b20422 0.61 -0.5 436,705 - SM_b20422 0.61 +0.5 436,741 - SM_b20422 0.64 +0.1 436,776 + SM_b20422 0.67 +0.1 436,846 + SM_b20422 0.74 -0.6 436,972 + SM_b20422 0.85 -0.3 436,973 - SM_b20422 0.86 -0.2 437,037 - -0.7 437,050 - -0.4 437,050 - +0.4 437,147 - -1.0 437,628 - SM_b20423 0.36 +0.7 437,678 + SM_b20423 0.40 +0.3 437,748 + SM_b20423 0.45 +0.1 437,753 + SM_b20423 0.45 +0.5 437,753 + SM_b20423 0.45 -0.4 437,754 - SM_b20423 0.45 +0.3 437,754 - SM_b20423 0.45 +1.7 437,786 + SM_b20423 0.47 -0.6 437,900 + SM_b20423 0.56 -0.2 437,901 - SM_b20423 0.56 +0.2 437,948 + SM_b20423 0.59 +2.0 437,948 + SM_b20423 0.59 +0.5 437,949 - SM_b20423 0.59 +0.1 437,952 - SM_b20423 0.59 -1.2 438,053 + SM_b20423 0.67 +0.5 438,111 - SM_b20423 0.71 -0.6 438,111 - SM_b20423 0.71 -0.6 438,111 - SM_b20423 0.71 +0.1 438,113 + SM_b20423 0.71 -0.3
Or see this region's nucleotide sequence