Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20391 and SM_b20392 are separated by 35 nucleotides SM_b20392 and SM_b20393 are separated by 144 nucleotides SM_b20393 and SM_b20394 are separated by 23 nucleotides
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
SM_b20392: SM_b20392 - transcriptional regulator NanR, at 405,680 to 406,387
_b20392
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
SM_b20394: SM_b20394 - hypothetical protein, at 407,812 to 409,140
_b20394
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.547 kb on - strand at 405.681 kb on + strand at 405.681 kb on + strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.699 kb on + strand at 405.700 kb on - strand at 405.803 kb on + strand, within SM_b20392 at 405.804 kb on - strand, within SM_b20392 at 405.886 kb on - strand, within SM_b20392 at 405.887 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.077 kb on - strand, within SM_b20392 at 406.207 kb on + strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.517 kb on + strand at 406.517 kb on + strand at 406.518 kb on - strand at 406.536 kb on + strand at 406.536 kb on + strand at 406.547 kb on + strand at 406.547 kb on + strand at 406.682 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 407.055 kb on - strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.175 kb on - strand, within SM_b20393 at 407.187 kb on + strand, within SM_b20393 at 407.188 kb on - strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.583 kb on - strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.676 kb on + strand at 407.677 kb on - strand at 407.723 kb on + strand at 407.834 kb on - strand at 407.836 kb on + strand at 407.836 kb on + strand at 408.067 kb on + strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.114 kb on - strand, within SM_b20394 at 408.241 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.351 kb on - strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 405,547 - +0.2 405,681 + +0.4 405,681 + -0.4 405,682 - -1.0 405,682 - +0.4 405,682 - -0.9 405,699 + -1.0 405,700 - -0.1 405,803 + SM_b20392 0.17 -0.9 405,804 - SM_b20392 0.18 -1.2 405,886 - SM_b20392 0.29 -1.3 405,887 + SM_b20392 0.29 -1.3 406,076 + SM_b20392 0.56 -1.8 406,076 + SM_b20392 0.56 +0.0 406,077 - SM_b20392 0.56 +0.3 406,207 + SM_b20392 0.74 -2.7 406,208 - SM_b20392 0.75 -1.8 406,208 - SM_b20392 0.75 -0.3 406,517 + +0.7 406,517 + -0.8 406,518 - -0.9 406,536 + +1.2 406,536 + -0.6 406,547 + -1.2 406,547 + +0.1 406,682 - SM_b20393 0.12 +0.8 406,836 - SM_b20393 0.24 +0.1 406,836 - SM_b20393 0.24 -0.2 406,836 - SM_b20393 0.24 +0.8 407,055 - SM_b20393 0.42 +0.3 407,174 + SM_b20393 0.51 -2.6 407,174 + SM_b20393 0.51 +0.1 407,175 - SM_b20393 0.51 -1.4 407,187 + SM_b20393 0.52 -0.5 407,188 - SM_b20393 0.52 +0.6 407,582 + SM_b20393 0.84 -0.8 407,582 + SM_b20393 0.84 +0.2 407,582 + SM_b20393 0.84 +0.3 407,583 - SM_b20393 0.84 +0.2 407,615 + SM_b20393 0.86 -2.0 407,615 + SM_b20393 0.86 +1.7 407,676 + -0.7 407,677 - -0.1 407,723 + +0.7 407,834 - -0.1 407,836 + -0.3 407,836 + +0.0 408,067 + SM_b20394 0.19 +0.4 408,068 - SM_b20394 0.19 -1.7 408,068 - SM_b20394 0.19 +0.3 408,113 + SM_b20394 0.23 +0.1 408,113 + SM_b20394 0.23 -1.0 408,113 + SM_b20394 0.23 -0.9 408,113 + SM_b20394 0.23 -0.4 408,113 + SM_b20394 0.23 +0.8 408,114 - SM_b20394 0.23 -0.6 408,241 + SM_b20394 0.32 +0.5 408,350 + SM_b20394 0.40 +0.7 408,350 + SM_b20394 0.40 -1.4 408,351 - SM_b20394 0.41 +0.0 408,529 + SM_b20394 0.54 -0.5 408,529 + SM_b20394 0.54 +0.6 408,529 + SM_b20394 0.54 -1.2 408,529 + SM_b20394 0.54 +0.4 408,529 + SM_b20394 0.54 -0.3 408,529 + SM_b20394 0.54 -1.7 408,530 - SM_b20394 0.54 +1.9 408,530 - SM_b20394 0.54 -0.8
Or see this region's nucleotide sequence