Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20370 and SM_b20371 are separated by 44 nucleotides SM_b20371 and SM_b20372 are separated by 23 nucleotides SM_b20372 and SM_b20373 are separated by 11 nucleotides SM_b20373 and SM_b20374 are separated by 79 nucleotides
SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303
_b20370
SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794
_b20371
SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095
_b20372
SM_b20373: SM_b20373 - TRAP dicarboxylate transporter, at 385,107 to 385,574
_b20373
SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646
_b20374
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.878 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 383.171 kb on - strand, within SM_b20370 at 383.301 kb on + strand at 383.302 kb on - strand at 383.428 kb on - strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.692 kb on - strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.707 kb on - strand, within SM_b20371 at 383.788 kb on + strand at 383.788 kb on + strand at 383.789 kb on - strand at 383.794 kb on + strand at 383.795 kb on - strand at 383.900 kb on + strand at 384.267 kb on + strand, within SM_b20372 at 384.268 kb on - strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.547 kb on + strand, within SM_b20372 at 384.548 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372 at 384.853 kb on - strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 385.003 kb on + strand at 385.003 kb on + strand at 385.003 kb on + strand at 385.004 kb on - strand at 385.004 kb on - strand at 385.034 kb on + strand at 385.259 kb on + strand, within SM_b20373 at 385.380 kb on - strand, within SM_b20373 at 385.593 kb on + strand at 385.594 kb on - strand at 385.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 382,878 - SM_b20370 0.37 -1.2 382,878 - SM_b20370 0.37 +2.5 383,171 - SM_b20370 0.80 -0.8 383,301 + +0.4 383,302 - -0.4 383,428 - SM_b20371 0.18 +1.2 383,691 + SM_b20371 0.77 -0.9 383,691 + SM_b20371 0.77 +2.1 383,691 + SM_b20371 0.77 -1.0 383,692 - SM_b20371 0.77 -0.6 383,706 + SM_b20371 0.80 -0.7 383,706 + SM_b20371 0.80 +1.8 383,706 + SM_b20371 0.80 -1.0 383,706 + SM_b20371 0.80 -0.6 383,707 - SM_b20371 0.80 +0.6 383,788 + +0.2 383,788 + -1.0 383,789 - -0.2 383,794 + -0.1 383,795 - -0.7 383,900 + -2.5 384,267 + SM_b20372 0.35 -0.1 384,268 - SM_b20372 0.35 -0.5 384,359 + SM_b20372 0.42 -0.6 384,359 + SM_b20372 0.42 -1.2 384,360 - SM_b20372 0.42 -1.3 384,360 - SM_b20372 0.42 -1.6 384,360 - SM_b20372 0.42 -0.9 384,360 - SM_b20372 0.42 -1.5 384,547 + SM_b20372 0.57 -1.5 384,548 - SM_b20372 0.57 +0.8 384,627 - SM_b20372 0.63 -1.5 384,627 - SM_b20372 0.63 +0.5 384,853 - SM_b20372 0.81 -0.5 384,956 + SM_b20372 0.89 +1.0 384,956 + SM_b20372 0.89 +0.1 384,957 - SM_b20372 0.89 +0.1 384,957 - SM_b20372 0.89 -1.7 385,003 + +0.0 385,003 + +0.3 385,003 + +0.2 385,004 - +0.0 385,004 - +0.1 385,034 + -0.2 385,259 + SM_b20373 0.32 +0.2 385,380 - SM_b20373 0.58 +0.6 385,593 + -0.0 385,594 - +0.2 385,655 + +0.4
Or see this region's nucleotide sequence